Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0165 ATGGGTGATCCTCAATTTGTTCTTCCATATCATGAATCATATGATATTCCACTCCACCCAAATCTTTTCAATCTCATCAATAACAACACTAATTTACTCAATACACTGCCTCAACAAAAAATCCATAATGGACTACTTCAAGATGTTATTAACAACGCTACACTCCTATCTTCACCATCCCAACAAATTCATCATCATCCAATTGGAAATAATGGACTTCAAGATGTTAACCATAATTCTATACTTGCTCCAATGTCCCAACCACTTTACTGTGGACATGGAAATAATGGAGTTCAAGAGGTCAATCATAATAATCAAGTTCAATCGTTTATGGACCCATTGATTCAAGACCACTCCATGCACAACATGAGTAATAATTATTTCCTCAGTGGAGGAGGAATTGGTGGAGGGTCTGGAGGAAGCAACAACTTCGAAGCGGGTCCATCACAAGTGCATGCACAGAGTTCAAGTCAACCCTTACCAAAGTGGAACTTATTAGGGTCACCAAATTTCAACAACATTGACGTGATGCCACTTTCGTATTGGCCTGAGCCACCAACCCGTTTTAGTTGTACGTGTTGTCAAGTTCTGAGAGAGATCCTTCACACCAATGGTAATAACTTCAATAAACTCGAGATTCATGGAAGGCTTGGGATGATATGTCATGCAATTTATCATCAGAATATAATTGCCTGGAATAACAATTGGGGTGCTTCATTTAACCCTCAAATTCAAATGATTGATTTTAGCACGAAAAACATTCAAGAAATCAAGAATTTCCTAGTGGAATATTGTCTGGGTCAATGTTCTTCAGGCTATGCAATGGTGCAAGATCCATTTTATGCTTATTATGAGGCCCTCTGCACTGGATTCGACTGGGCTGATGACTTAGATGACTACATCGATTTGAATCCAAATACTTCAGGAGGACAATCCGATGAAATGGAACAAGAGGTTGAGAACGGAAGAGTTTCTAGACTTAACCTTGCAGAGAAGAGAGAGAGAATAGCAAAGATGAATTTGAGTGATTTAAGTGATTACTTTCATATGCCTATTGGGGAAGCAGCGAGAAGATTGGACCTTTGTGTTACTGCTGTGAAGAAAGTTTGTCGCAGGGGAGATCTAGAAAGATGGCCTCACAGAAAGATCAAAAGTGTTGTGAAGCAGATCAGAGTACTGAGAAGATCTTTAAATTCAGCAGATGCAATGACAAGGGCAAGAACTGAGGCAGACATTATCAGACTTGAAGAACTAATGAGGCAGCACTGTGGTGGAATTGCCCCAACTGCAATAAATTACAACCCATAA 1308 0.3953 MGDPQFVLPYHESYDIPLHPNLFNLINNNTNLLNTLPQQKIHNGLLQDVINNATLLSSPSQQIHHHPIGNNGLQDVNHNSILAPMSQPLYCGHGNNGVQEVNHNNQVQSFMDPLIQDHSMHNMSNNYFLSGGGIGGGSGGSNNFEAGPSQVHAQSSSQPLPKWNLLGSPNFNNIDVMPLSYWPEPPTRFSCTCCQVLREILHTNGNNFNKLEIHGRLGMICHAIYHQNIIAWNNNWGASFNPQIQMIDFSTKNIQEIKNFLVEYCLGQCSSGYAMVQDPFYAYYEALCTGFDWADDLDDYIDLNPNTSGGQSDEMEQEVENGRVSRLNLAEKRERIAKMNLSDLSDYFHMPIGEAARRLDLCVTAVKKVCRRGDLERWPHRKIKSVVKQIRVLRRSLNSADAMTRARTEADIIRLEELMRQHCGGIAPTAINYNP 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0165 435 Pfam RWP-RK domain 339 386 IPR003035 -
Lal17g0165 435 ProSiteProfiles RWP-RK domain profile. 326 406 IPR003035 -
Lal17g0165 435 MobiDBLite consensus disorder prediction 139 158 - -
Lal17g0165 435 MobiDBLite consensus disorder prediction 142 158 - -
Lal17g0165 435 PANTHER PROTEIN RKD4 62 424 IPR044607 GO:0003700
Lal17g0165 435 PANTHER RWP-RK DOMAIN PROTEIN 62 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0165 Lal-Chr17 1001334 1003645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0165 292 412 AtRKD Transcription Factor Family AT4G35590 30.303 1.12e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lal17g0165 RWP-RK 2.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0165 - - lang:109328222 599.742