Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0159 ATGTCTATCGTCCAGCATGGGTCATCCTTAAACGCCACAATGGTGGCTGTTGACAAAGACAAGAACAGTGCTTATGCATTTCGTTGGGCAATTAATCATCTTGATAACCCTGTCATCATTGCTGTCCATGTCAAGCACAAAAACCTTCATCATAACGGCGGCACCAATGTTTACCCACCTGATGAAGAGGATATGGACAATATTTTCAGTGCCTTGCGTGGAATGTGTAATCGTAAAGCCGTGGAGGTTAAAGAAGCTGTCATCGATGATATTGATATTGTGAGAGGACTTCAAGAATATGCACATAGGAATGTAGTACATAGTATTGTTGTTGGTGCATCCAGGAACGCTTTGTCAAGTCTCAAAAAATTGAAAGGCTATGATGTACCAACAGCCATGCTCAAAACAGCCCCAGATTATAGTTCTGTATATGTGATTTCCAAGTGGAAGATTGTGCAAGCTCGATCAGCGATTCGCCCAATGGCAAATGTTCCTATCCCACCAAAAAACCCACTTGTGCATCCAATCCCACATAATGAATTAGAAAATGGAACAAGGATACCCCCATATCATCCGAATGGAATGTATTATGAGAAGAACAATAATAATGTATCTAGAAGACCAAGGAGTGCAGGAAGTAATCAATCAATGGACCACATTGATATAGCAGCTCGTTCAAGACACATGTCAATGGATGAAAAAGACATTATTCCAGGGGTTATGTCAATGGATTTAACTAAACAAAATTTAGATTTATCAGAATCCCACGGGAACTCACCAATATCCCAATCCACAAAAGAAATGGAAGCTGAGATGAATAGACTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCGGCTTGCAAACAAGCAATCTCAGCAAAAAATCAGGCTGAACAGATTCGCCAATGGAAACTGAAAGAGGAACGCATGGTTGAGGAATCAAGGTTATCTCAAGAGGCAGCTCTTGCAATGGCAGCACAGGAGAAGTTAAAAGCCATAGCTGCATGGGAAGAAGCTGAGGAAGCAAAGAAGAAGGCTGAAAGGGAAGCAAAGAAAAGAAGGGAAGCAGAGATGAAGGCTAAGAAAGAAGCAGAAGAGAAGGATCGGGTATTAACCGCATTGGCTCAAAATGATAATCGATATAGAAGATACACCATAGAGGAGATTGAAGTAGCTACTGATCAGTTTTCTGCATTAAAGAAAATAGGTGAAGGTGGATATGGACCTGTATATAAAGGCAAACTTGATCACACCCCAGTTGCAATCAAAATTCTAAGCCCTGATGCTTCTCAGGGCAGGAAGCAGTTTCAACAAGAGGTTGAGGTACTAAGCCGCATTAGACATCCTAATATGGTGCTCCTACTTGGTGCTTGTCCTGAGTACGGGTGCTTGGTGTATGAACACATGGACAATGGTAGCTTAGATGACAGATTGTTTAGAAGAAATAACAGCCCACCTCTTTCATGGAAGAAACGGTTTCAAATATCTGCTGAGATTGCAACTGCACTTCTTTTCCTTCACCAAACAAAACCTGAGCCCCTTGTGCACAGAGATCTTAAACCAGCAAACATTTTATTGGATAGGAATTATGTCAGTAAAATTGCTGATGTTGGTCTTGCACGATTAGTCCCTCCTTCTGTAGCTGATACAGTCACACAATATTACATGACTTCAGCTGCTGGAACCTTTTGCTATATTGATCCTGAGTATCAAAGTTCAGGAATGTTAACACCAAAATCAGATATATATTCATTTGGGATAATGTTACTGCAAATAATCACAGCCAAGCCTGCTATGGGACTTGCTCACCAAGTCAAGAGGGCAATTGAGAAGGACAAGTTTGAAGAGATACTTGATCCTGCGGTCACTGATTGGCCAGTTCAAGAGGCTCTTGAATTTGCCCAATTAGCATTACACTGTGCTGAACTCAGCAAGAAGGACAGGCCAGATCTAGCAAAAGTTATATTGCCAAAGCTTAGTAGTTTAAGAGAGTTTGCAAATGCTTCTCACAATAATCAAGTTTTTTGCAGCGTTGATCAAACGAATAGCTATTTTGCACGCCCTCTTTATTCTGCATCGTCAAATCTAAATTCAAAGACTCTAAGTAGAAGCTAG 2124 0.4101 MSIVQHGSSLNATMVAVDKDKNSAYAFRWAINHLDNPVIIAVHVKHKNLHHNGGTNVYPPDEEDMDNIFSALRGMCNRKAVEVKEAVIDDIDIVRGLQEYAHRNVVHSIVVGASRNALSSLKKLKGYDVPTAMLKTAPDYSSVYVISKWKIVQARSAIRPMANVPIPPKNPLVHPIPHNELENGTRIPPYHPNGMYYEKNNNNVSRRPRSAGSNQSMDHIDIAARSRHMSMDEKDIIPGVMSMDLTKQNLDLSESHGNSPISQSTKEMEAEMNRLRLELKQTMDMYSSACKQAISAKNQAEQIRQWKLKEERMVEESRLSQEAALAMAAQEKLKAIAAWEEAEEAKKKAEREAKKRREAEMKAKKEAEEKDRVLTALAQNDNRYRRYTIEEIEVATDQFSALKKIGEGGYGPVYKGKLDHTPVAIKILSPDASQGRKQFQQEVEVLSRIRHPNMVLLLGACPEYGCLVYEHMDNGSLDDRLFRRNNSPPLSWKKRFQISAEIATALLFLHQTKPEPLVHRDLKPANILLDRNYVSKIADVGLARLVPPSVADTVTQYYMTSAAGTFCYIDPEYQSSGMLTPKSDIYSFGIMLLQIITAKPAMGLAHQVKRAIEKDKFEEILDPAVTDWPVQEALEFAQLALHCAELSKKDRPDLAKVILPKLSSLREFANASHNNQVFCSVDQTNSYFARPLYSASSNLNSKTLSRS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0159 707 CDD STK_N 15 148 - -
Lal17g0159 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Lal17g0159 707 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 12 679 - -
Lal17g0159 707 Coils Coil 265 285 - -
Lal17g0159 707 SUPERFAMILY Protein kinase-like (PK-like) 383 658 IPR011009 -
Lal17g0159 707 Gene3D HUPs 2 138 IPR014729 -
Lal17g0159 707 Pfam Protein tyrosine and serine/threonine kinase 401 657 IPR001245 GO:0004672|GO:0006468
Lal17g0159 707 SMART serkin_6 399 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0159 707 Gene3D Transferase(Phosphotransferase) domain 1 472 686 - -
Lal17g0159 707 Coils Coil 332 371 - -
Lal17g0159 707 ProSiteProfiles Protein kinase domain profile. 399 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0159 707 Gene3D Phosphorylase Kinase; domain 1 345 471 - -
Lal17g0159 707 CDD STKc_IRAK 405 658 - -
Lal17g0159 707 PANTHER OS02G0152300 PROTEIN 12 679 - -
Lal17g0159 707 Pfam Universal stress protein family 14 121 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0159 Lal-Chr17 974467 978515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0159 85 679 Receptor kinase-like Gene Family AT5G12000 57.581 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lal17g0159 PK_Tyr_Ser-Thr 3.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0159 - - gmx:100798861 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0159 17 974467 978515 Lal17g0159 17 974467 978515 ECH
Lal17g0159 17 974467 978515 Lal21g0272 21 1807414 1810797 LSH