Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0154 ATGTGTTCTGTGAATGAAATGAAGGGTATTAGTGTGAAAGAGGAATCAGAGACAGTAACAGTAGCTGTAGCAGCTGGTTCATCATCTTCATCTTCAAATCTTTCACCTCAGCCAATGGAAGGGTTACATGAGATGGGTCCACCTCCATTTCTCACTAAAACTTTTGATGTTGTGGAAGATCCATCCACTGATTCCATTGTTTCATGGAGCATAAATCGCAACAGTTTTGTTGTTTGGGATTCTCACAACTTTTCCACTGCTATCTTACCTCGTTACTTCAAGCATAACAATTTCTCCAGCTTCGTTCGCCAGCTCAATACATATGGTTTTAGAAAAATTGATCCAGATAGATGGGAATTTGCAAATGAAGGGTTTTTGGCAGGGCAGAGGCACTTATTGAAAACCATAAAGAGAAGAAGAAATGTGACACAGTCACAGGCACAAGGTATGATGCAAGGAAGTGATGCTTGTGTTGAATTGGGGGAATATGGACTAGAAGGTGAACTTAACAGATTGAAGAGGGACAGAACAGTTTTGATGACTGAAATCGTGAAGCTGAGGCAGCAACAACAGAATTCAAGGGAGCAATTGATTGCAATGGAGGCCAGATTGCAAAGCACTGAGAAGAAACAGAAACAGATGATGACTTTCCTTGCCAAAGCAATGAGTAACCAATCTTTTATACAACAACTCGCACGAAGGAATGCTCAGAACAAATTGCAAGGTGGTGAGTTCAGTAGAAAGAGGAGACTTACTGCAAGCCCAAGTATGGAGAATATGCAACAACAACAACAACAACAACGTTCAGTGCCTTTTGAGACAGTGGAGTATGCAACCCAACAAGAAGACGATTTAGCAACTATTGAGTCTGAGATGGAGTCATTTTTCTCAACTGGTTATGATAATGAATCAAGCACTGAAATCAAAGAGCCAATAATGACTCAAGCAGCTATTGGTGGGAGTGACTTGGGTTCTGTGACTGATGCTATATGGGAAGAGTTGCTGAATGAAGACTTGATTGGTGGGAATCAAGGGGATGAAGTTGTGATTGGTGACTTTTCACAGATTGATGTGCCAGTGGAGGATTTGGTAGCAAAGCCGGGTGATTGGACTGAAGACTTGCAGAGCCTTGTGGACCATATAGGTTCTCTTGGCTCCAAACCCTAG 1167 0.419 MCSVNEMKGISVKEESETVTVAVAAGSSSSSSNLSPQPMEGLHEMGPPPFLTKTFDVVEDPSTDSIVSWSINRNSFVVWDSHNFSTAILPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLAGQRHLLKTIKRRRNVTQSQAQGMMQGSDACVELGEYGLEGELNRLKRDRTVLMTEIVKLRQQQQNSREQLIAMEARLQSTEKKQKQMMTFLAKAMSNQSFIQQLARRNAQNKLQGGEFSRKRRLTASPSMENMQQQQQQQRSVPFETVEYATQQEDDLATIESEMESFFSTGYDNESSTEIKEPIMTQAAIGGSDLGSVTDAIWEELLNEDLIGGNQGDEVVIGDFSQIDVPVEDLVAKPGDWTEDLQSLVDHIGSLGSKP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0154 388 ProSitePatterns HSF-type DNA-binding domain signature. 89 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal17g0154 388 SUPERFAMILY "Winged helix" DNA-binding domain 46 139 IPR036390 -
Lal17g0154 388 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 28 340 IPR027725 -
Lal17g0154 388 Gene3D - 43 140 IPR036388 -
Lal17g0154 388 SMART hsfneu3 46 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal17g0154 388 Pfam HSF-type DNA-binding 50 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal17g0154 388 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 28 340 - -
Lal17g0154 388 PRINTS Heat shock factor (HSF) domain signature 50 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal17g0154 388 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal17g0154 388 PRINTS Heat shock factor (HSF) domain signature 101 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal17g0154 388 Coils Coil 169 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0154 Lal-Chr17 950833 953136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0154 36 388 HSF AT2G26150 49.861 3.70e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal17g0154 HSF_DNA-bind 1.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0154 K09419 - gmx:100794605 484.952