Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0141 ATGAATTTCAACATGGATTCTGATAAAGCGAAGCTGTTCATAGGGGGAATTTCTCGGGAGACTACCAACGATATTCTGAGAGATCACTTCGCCAAGTACGGCATCGTATTGGATTCCGCAATTTCAGTAGACCGCATCACTCGAAGCCCTAGAGGTTTTGGCTTTGTTACATTCTCTGATCTCTCTGAAGCTGAAAAGGCTCTTCAGGACAACCACGTTATTCTTGGAAGAACGGTAGAAGTGAAAAAAGCAATACCCAGAAGTGAACAGCAACACCAAAATCAAATACAGAATAGAGGGGCGAGTAACTATATCAGTAGTAATGACTGTAGCTGTGACCAGTTTAGGACGAAAAAGATATTTGTAGGAGGTTTGTCTGCCGGTATATCCGAGGAAGAGTTTAAAAGTTACTTCGAGAGGTTTGGTCGGATAACGGATGTAGTGGTGATGCAGGACAGTGTAACTCACCGGCCTCGGGGGTTTGGGTTCATCACTTTTGATTCAGAAGAATCAGTTGAAAATGTTGTGGTGCAAAGTTTTTATGACTTGAATGGTAGACAGGTAGAGGTCAAGAGGGCTGTACCAAAAGAGGGGAACTATGGCGGTGATGGTTTTAACAAATCAAGATATAATAAGAGTGAAAGAGGAGCCTATCAAAGTTATCCTCCTCTTAGTCCTAGGTACATTTCCACTGGCTTTGCACCCTTGCCCTATTATACTAGTGGTGGTGTTTATGCCTATGGATCAAACCCCTATGATTATTGCTACACTATGGGTGGGTATGGAGGAAATGGATTTGCAGTTCCATCTGATGCTTCTAGAAACTTTTGGTATGGGCCCATGGTAGCCAATCCTCAAGTATATCAGTTGCCTTATACCAATGCCTCTTCCAGTGTAGCATATGCGGGTGGGAGGGTTGGAATAGTCGGTGGTCCTGGAATCCGGGGGTATAATGGATTTGTTCCAGACTATGTGACGCCACCTCAAAGTTACAAGCGCAATGCCGATTCTTCAAGATTCAGGGGATGCAATGGAGAAATTTCTAGCACTATTGAATTCAAGGAGATGAGTGGCTTTGAAAATGAGATGGGGCTTCAACATGAAAATGAGGGCATGGAAATTAGTTCTATGTCTCTGGCTAATCCATTTCTGCTTGCTTCTTCTGATTGGGGTCCACTTGTTTCATTGAGTCAGGTTCAAACTTTTGGAGGATCTCCAATGGGTTCTCATAGTGACTTTGCCAATTCATCTTACCCTCTTGTTTTAGAAAATCAGGGAATGAGTTGCACATCTCACTTAGTTCAATATATATCTGACTCAAATCATGAAGTCATGGTCCCACAGGTTCCCTCCTATGGAAGTGCCAGCTTCTTAGAAATGGTTGATGTAGCAAACACATGGTATCAGCCAAATTGTAATCCGAACAATGAAGCGGTAATAGAACCAGGATCTGCACCCAATGAAAATAGAAGAAAAAGAGGTCATGACTATAACTCTACTTTAAATAAGAATGCTGCAGGGGATGCGATGAAAAGTTCTTTTGAGAAGAACTCTAATGGTGTGAAAGAACAAGATGAAAAGAAACAAAAAGTGGAGCAAAGTATTAGTGCACATTTGCGTGGTAAGCAAAATAAAGACAACACTCACAGTGAAGAAGATCCTAAAGAAATTTTTGTTCATCTGAGAGCTGGAAGAGGAAAAGCTACAAATAGTCATAGCCTTGCAGAAAGGGTAAGGAGAGAAAAGATTAGTGAACGATTTAGGTTTCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACAGGCAAAGCAGTAATGCTTGATGAGATTATAAACTACGTGCAATCATTGCAACAGCAGGTTGAGTTCTTGTCCATGAAACTTGTCACTGTAAACCCAGAACTGAATTTCGACATAATAGAGCAAATCCTTTCTAAAGATTCACGCATTGAACATAATAGACCTATTGGTGGATATGGTCCTACAAACAATTGCTCTCATCCATTCCCCAGTGAAAGTTCCCAGGGAACACTACCAGCCATGTTGAGCACATCAACACAATTCCTTTCTTTGCCCCGGTCTGTTTTGGACCAAGAGTTCCAAAGCTTATATGAAATGAGCTACAAATCCACTAATGTTCTTCACAATTTGGCACCTAATGGACAGAGACAAATAAAATACAAGTAA 2187 0.4129 MNFNMDSDKAKLFIGGISRETTNDILRDHFAKYGIVLDSAISVDRITRSPRGFGFVTFSDLSEAEKALQDNHVILGRTVEVKKAIPRSEQQHQNQIQNRGASNYISSNDCSCDQFRTKKIFVGGLSAGISEEEFKSYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVENVVVQSFYDLNGRQVEVKRAVPKEGNYGGDGFNKSRYNKSERGAYQSYPPLSPRYISTGFAPLPYYTSGGVYAYGSNPYDYCYTMGGYGGNGFAVPSDASRNFWYGPMVANPQVYQLPYTNASSSVAYAGGRVGIVGGPGIRGYNGFVPDYVTPPQSYKRNADSSRFRGCNGEISSTIEFKEMSGFENEMGLQHENEGMEISSMSLANPFLLASSDWGPLVSLSQVQTFGGSPMGSHSDFANSSYPLVLENQGMSCTSHLVQYISDSNHEVMVPQVPSYGSASFLEMVDVANTWYQPNCNPNNEAVIEPGSAPNENRRKRGHDYNSTLNKNAAGDAMKSSFEKNSNGVKEQDEKKQKVEQSISAHLRGKQNKDNTHSEEDPKEIFVHLRAGRGKATNSHSLAERVRREKISERFRFLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLVTVNPELNFDIIEQILSKDSRIEHNRPIGGYGPTNNCSHPFPSESSQGTLPAMLSTSTQFLSLPRSVLDQEFQSLYEMSYKSTNVLHNLAPNGQRQIKYK 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0141 728 SUPERFAMILY RNA-binding domain, RBD 6 105 IPR035979 GO:0003676
Lal17g0141 728 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 363 724 IPR024097 GO:0006355
Lal17g0141 728 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Lal17g0141 728 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 177 IPR000504 GO:0003723
Lal17g0141 728 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Lal17g0141 728 SMART finulus 573 623 IPR011598 GO:0046983
Lal17g0141 728 Gene3D - 116 197 IPR012677 -
Lal17g0141 728 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 363 724 - -
Lal17g0141 728 SMART rrm1_1 11 82 IPR000504 GO:0003723
Lal17g0141 728 SMART rrm1_1 119 191 IPR000504 GO:0003723
Lal17g0141 728 MobiDBLite consensus disorder prediction 518 535 - -
Lal17g0141 728 Gene3D - 564 637 IPR036638 GO:0046983
Lal17g0141 728 Pfam Helix-loop-helix DNA-binding domain 570 618 IPR011598 GO:0046983
Lal17g0141 728 MobiDBLite consensus disorder prediction 499 517 - -
Lal17g0141 728 Gene3D - 3 115 IPR012677 -
Lal17g0141 728 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 567 617 IPR011598 GO:0046983
Lal17g0141 728 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 565 635 IPR036638 GO:0046983
Lal17g0141 728 MobiDBLite consensus disorder prediction 480 553 - -
Lal17g0141 728 CDD bHLH_AtBPE_like 558 639 - -
Lal17g0141 728 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Lal17g0141 728 SUPERFAMILY RNA-binding domain, RBD 115 215 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0141 Lal-Chr17 870913 878116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0141 362 722 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 40.665 4.16e-64 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal17g0141 RRM_1 3.4e-14 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0141 - K14411 gmx:100816822 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0141 17 870913 878116 Lal17g0141 17 870913 878116 ECH
Lal17g0141 17 870913 878116 Lal21g0251 21 1640029 1644798 LSH
Lal17g0141 17 870913 878116 Lal4g0157 4 972308 974106 LSH