Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0126 ATGAAATGGCAAAGAGGTGCAGTTGGTTCCATGTCTGAAACATTTGAATTTCATCGTGATTCTACATCAAGTAATGCTACTATGGATCAGCAGATTTTCTGGAATAATGTGCGGAATACTGCTGAAAATCAAGTGCCTGAATATATCCTTTCCCCCAGTGATATTAACTCAGTTTATGTCAATTCTATAAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGTGAGCCTAGTTCCAGTAATACAGCGAATGAGATTAACAATGATGAGCAGAAAAGAGAGCTTGGATGGTCTTCACCAATAAATGCTGGTGCATTATCTAGTCCAAGGGTAGAAGAAAGGCGCCTTGAACCAACCAATGCTCTTTCGCTGGATAATGTCAATACAGGTCCCATCTATATGTGTAGCTCCAATTCTCATCTAATCTCCCAGAATCTCAACTCAAATTCAGATATAGCAGACAATGGCAGCGATAACAGTCAACAGCGGGATCGGCCTAACTTGCCCAAGTCTAGTGGATCTGTGAATGAGCATATTCCACCTAGTATTGGTTCTGGTGCTGGATCTTTCTTAATTCCTCAAGGAAATAATGACTTTTTGGCAGAAGATACTGATGGCAGGTCAGGTTGTTCTCTAGGCACTAGCCGTGTATGTTGTAAAAGAAAGGCTGTTGAACGAAATGCTGGACAATCTTCAGACGGTGGAAGTTCTAGCTATATTCAGCAGGGGGATGGTAGTGCTTGGCACCCTTTTCCCACCCAGGATAATGCTCAGAGCAGTTTAAGCATGACTATTTCAGTAGAACAGCTAAATGCAAGACTTGGCTTAGGCATGGGGGATGGAGCCTCTGAAAGTGTCCCCGATTCATATGTTGCAGGAATCTCAGATAGTTTGCACAAGAACTTTCGTTTGAGGATAAATCCTTCAAACCCACAAAATTCTACTCCTCCCACTGCATTTATAGCTGGGAATGTGATCAGGCATTCTGGTGCTTCAACCTCTTCGACATCACAAAGGTTTCATCCTGTTGATAGTTCTATGTACTTGAGGGCAGCACTGCCGATTGATAATATGATTCCTCCAAGCCAGCCACCTGTAACCCATGCTCCTGCGTTGCCAAGGAATAGGCAATCATATAGATGGAGTGGTGGTTCTAGTTCAAGAAACATCCTTTCATCAAACTCAATTATATGTCCAGACAGGGATAATCTACCACAAGATGGTGCAAGCTCAGGAAGTATGTCTAGAAATGCTGTAGAACACCCAGTCTTTGCACCTGCAACTGATTTAGGAAATTTGGCTCAACACCCAGCAATTAGTGGTTCAAGTTCAAGTATTGCAAATTTAAGCATTCCCGGGAATGTTGCTTCTTCTTCGCCAACTGCATTTATTTCAGCTACCAATCCATCATCTGCTTCAACCTGGGCTTCTTATCCTAATCTTCCACAGCATCCCCGAAGGTTACCTGGCTATGTCCGTCGGTCCTTGTTTCCTCCTGCTTCTGAGGCTACGGGAGGTCCAAGCAATAATCTCTCTGTCTTGCGCCCTGGTCCTTTCACATCTGAGCCGAGGGTGCTATCAACTGGGGCACACCCGAGATCAGCTTTGAGGTTAGAAAGGCGAGGAGGTAATAGTGAGTTTGGAATACCCCATTCATTACGAGATTTGGCTGTCACAGGTGAAGGAAGTAGTAGAGTTGTATCCGAGCTCCGCAATGTTTTGGGCCGTATGCGTCGGGGTGGGAACCTCCAATTTGAGTGCTTATCACTGGTATCAGAGCAACATCTTGGCACCTGCTTGGGCAGGGATCACCCACCACTGCTTGCTGCACTCTTATGTATGGCAAGGGACATGGATAGTTGGATGCAAGAAAAGGAAGAACTAAAGCGTGATGGACAGGGCAGATTGGAAGTCTTTGTCAAATGGCGGTATCTCCCTCAACATGATTCCACATGGGAACTAACCACTACATTGAAAGACAACTTTCCTAGTTTCCAACTTGAGGACAAGTTAGAGAGTTTAGGGGAGAGTATTGATAAGGATGTTATGATCCTTGACCAATCAGTATTTTCCAGAATGGCTAATATTCACGACAGACACCAGGATATGCGTCTTGATGTAGATAACATGTCTTATGAGGAGTTACTAGCCTTGGAAGAGCGCATTGGAAATGTAAGTACTGGATTGAGTGAGGATACCATATTGAAACTTTTGAAACAGAAAAAGTATGTAGCTGAAACAGGACCTCAGCTAGATGCAGATCCCTGTTGTGTTTGTCAGGAAAATTATGGTGATGGAGATGATACTGGAAGGCTCGATTGTGGGCACGATTTCCATAGCAACTGCATTAAACAGTGGCTGATGCATAAGAATCTGTGCCCTATTTGTAAGACAACAGGCTTAGCAACATGA 2415 0.4389 MKWQRGAVGSMSETFEFHRDSTSSNATMDQQIFWNNVRNTAENQVPEYILSPSDINSVYVNSINHEWQNLSGWSLGEPSSSNTANEINNDEQKRELGWSSPINAGALSSPRVEERRLEPTNALSLDNVNTGPIYMCSSNSHLISQNLNSNSDIADNGSDNSQQRDRPNLPKSSGSVNEHIPPSIGSGAGSFLIPQGNNDFLAEDTDGRSGCSLGTSRVCCKRKAVERNAGQSSDGGSSSYIQQGDGSAWHPFPTQDNAQSSLSMTISVEQLNARLGLGMGDGASESVPDSYVAGISDSLHKNFRLRINPSNPQNSTPPTAFIAGNVIRHSGASTSSTSQRFHPVDSSMYLRAALPIDNMIPPSQPPVTHAPALPRNRQSYRWSGGSSSRNILSSNSIICPDRDNLPQDGASSGSMSRNAVEHPVFAPATDLGNLAQHPAISGSSSSIANLSIPGNVASSSPTAFISATNPSSASTWASYPNLPQHPRRLPGYVRRSLFPPASEATGGPSNNLSVLRPGPFTSEPRVLSTGAHPRSALRLERRGGNSEFGIPHSLRDLAVTGEGSSRVVSELRNVLGRMRRGGNLQFECLSLVSEQHLGTCLGRDHPPLLAALLCMARDMDSWMQEKEELKRDGQGRLEVFVKWRYLPQHDSTWELTTTLKDNFPSFQLEDKLESLGESIDKDVMILDQSVFSRMANIHDRHQDMRLDVDNMSYEELLALEERIGNVSTGLSEDTILKLLKQKKYVAETGPQLDADPCCVCQENYGDGDDTGRLDCGHDFHSNCIKQWLMHKNLCPICKTTGLAT 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0126 804 Pfam Ring finger domain 757 798 IPR001841 -
Lal17g0126 804 MobiDBLite consensus disorder prediction 147 180 - -
Lal17g0126 804 MobiDBLite consensus disorder prediction 379 416 - -
Lal17g0126 804 MobiDBLite consensus disorder prediction 230 258 - -
Lal17g0126 804 ProSiteProfiles Zinc finger RING-type profile. 757 798 IPR001841 -
Lal17g0126 804 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 674 803 IPR045191 GO:0061630
Lal17g0126 804 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 579 IPR045191 GO:0061630
Lal17g0126 804 SUPERFAMILY RING/U-box 756 800 - -
Lal17g0126 804 MobiDBLite consensus disorder prediction 364 416 - -
Lal17g0126 804 MobiDBLite consensus disorder prediction 497 516 - -
Lal17g0126 804 SMART ring_2 757 797 IPR001841 -
Lal17g0126 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 720 801 IPR013083 -
Lal17g0126 804 MobiDBLite consensus disorder prediction 91 115 - -
Lal17g0126 804 Gene3D - 622 669 - -
Lal17g0126 804 MobiDBLite consensus disorder prediction 147 191 - -
Lal17g0126 804 CDD RING-H2_TTC3 756 798 - -
Lal17g0126 804 MobiDBLite consensus disorder prediction 226 258 - -
Lal17g0126 804 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 579 - -
Lal17g0126 804 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 674 803 - -
Lal17g0126 804 SUPERFAMILY Chromo domain-like 630 665 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0126 Lal-Chr17 779329 786258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0126 681 804 C3H Transcription Factor Family AT2G15530 57.812 1.81e-46 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0126 - - gmx:100784575 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0126 17 779329 786258 Lal17g0126 17 779329 786258 ECH