Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0125 ATGACCTCATCCATAGCATCCTCCTTGTTTTCATCTTCCATCAACACACTCAAATGTCTCCGTAACAAGAACTGCTCCATAGACCCTTCTCTAATAACAAACCGCATCATGTTACCATCTATGTCACTTCCCTATATAGTGGAGCCTTTGTCCATTGGTACAATCTCACACAACTTGTGCTTGCCTATAATATCTGCAGCTCTTGCAGAACAGGAGCTAGTTGTGGCTGCTGAGGTTGATGTTGAAGAGAAAGTCGAGGAGGAAGGCCTAGCAGAAGAAGAAGAAGAAGAAAAGAGTGCAAATTCTATCAGCACTAAGCTATATTTTGGGAATTTGCCTTATAGTGTGGACAGTGCACAACTTGCAGGGTTAATTCAGGACTATGGCAGCGCAGAACTAATTGAGGTTCTTTATGACAGGGACACTGGAAAAAGCAGAGGCTTTGCATTTGTGACAATGAGTTGTATTGAAGATTGTAACGCAGTAATAGAAAATCTTGATGGAAGGGAGTTCGTAGGCCGAACATTGCGGGTTAACTTCTCTAACAAACCAAAACCAAAAGAACCCTTGTATCCTGAAACTGAACACAAGCTTTTTGTTGGGAACTTGTCATGGTCAGTAACTTCTGAGAGTCTGGTACAAGCCTTTCAAGAATATGGAAATGTGGTAGGGGCTAGGGTCTTATATGATGGTGAAACTGGAAAGTCGCGAGGTTATGGCTTCGTTTGCTTTTCAACAAAAGCAGAAATGGAATCTGCCCTTGCATCCTTGAATGATGTGGAACTAGAAGGACGGGCCATGCGTGTATTCTTGGCTGAAGCAAAACGTTCACAAGGTTAA 840 0.4262 MTSSIASSLFSSSINTLKCLRNKNCSIDPSLITNRIMLPSMSLPYIVEPLSIGTISHNLCLPIISAALAEQELVVAAEVDVEEKVEEEGLAEEEEEEKSANSISTKLYFGNLPYSVDSAQLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGREFVGRTLRVNFSNKPKPKEPLYPETEHKLFVGNLSWSVTSESLVQAFQEYGNVVGARVLYDGETGKSRGYGFVCFSTKAEMESALASLNDVELEGRAMRVFLAEAKRSQG 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0125 279 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 79 276 - -
Lal17g0125 279 SUPERFAMILY RNA-binding domain, RBD 99 188 IPR035979 GO:0003676
Lal17g0125 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Lal17g0125 279 SUPERFAMILY RNA-binding domain, RBD 189 276 IPR035979 GO:0003676
Lal17g0125 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Lal17g0125 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 267 IPR000504 GO:0003723
Lal17g0125 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 177 IPR000504 GO:0003723
Lal17g0125 279 Gene3D - 69 187 IPR012677 -
Lal17g0125 279 Gene3D - 188 279 IPR012677 -
Lal17g0125 279 SMART rrm1_1 106 179 IPR000504 GO:0003723
Lal17g0125 279 SMART rrm1_1 197 270 IPR000504 GO:0003723
Lal17g0125 279 PANTHER TRANSFORMER-2-RELATED 79 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0125 Lal-Chr17 776685 778947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0125 90 275 Eukaryotic Initiation Factors Gene Family AT3G16380 31.707 8.65e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0125 - - lang:109326572 389.808