Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0116 ATGAGAATTTCAGCCACTCTCCGTTATGGGCATTATGGAGATTCTCATCTTCTGCTTGGTCCTACCTCATCGCGTTTGATCAAGACCAGTTCTGTTTTTGTTAAGCAAATTCAAGTATCAAACAAGTTTAACAATCAAGTTACACTTCATGCTTTCAATCAGAAGCCTCACCTAAGCTCCCAAACAAATTGGACTTCCTCCAATTTCTACCTTGTTGCACCACATAGTTGCAAGGGAATTTATGTGTGGTTAAATAAAGGCTCCACCATCCGTATGATGTGGAAAGCACGTTCTAGTAAGAGTTTGAAACAGCTTCATGGGATTGTGGTCAAAGGAGAAAAGAACTTCGAAAAACTGCAGCCTAAACAAACAAGATTCACTCATCCAATTTTGGTTCACGAGACTGCTCGAGGTAAAGAAGCTGAATACATGGTTGAGGAAGATAACACATACAATATTGGGGTTCTAAACATGAATGTCAGGAACATAATATTGACTATGAATGTTAATATTTCGGCAAAGGTATATGATACCACCAATGCCAATAATGTGTGCTTTACTGCAAATGGATCGTGCAGACTCAATCTTATCTTCCCAAAAACCTATTACGTTATTCTTACAGCACCCAACAACCTAGATGGTGATGGATGGAATGTTGAAGTTTATTTTTTGGCTCGTGCCTTAAGCTACTTATTACTTTTAGGATGTACTATGATTGTTATTTATCTGATACTGAAAGTTCTTGGAGTCTCTGATGGCGATGAAGGAAATATTGATGAGATAATAGCCATCACACATAGAATAAGTAATATAGTTGCAACTCAAACTGAAATTGAGCCATTGATGCATGGGGAGTCAAATCGATCATCATATGGAACAAATGAAGAAGATGATGAAGAATGGGAAGCATCGAATAGCTCTTCAAATGAGTTATATGATGGAAAGTTATGTGTCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACATTTTGTAACTTGCTATGATTGTTCACAAAGGATTTTCGATGGGGAGAGTAAAAGGTGTCCCATATGCCGAAGGCTTATTCACAAAGTACGCTTATTAATTCATAGTTAA 1110 0.3748 MRISATLRYGHYGDSHLLLGPTSSRLIKTSSVFVKQIQVSNKFNNQVTLHAFNQKPHLSSQTNWTSSNFYLVAPHSCKGIYVWLNKGSTIRMMWKARSSKSLKQLHGIVVKGEKNFEKLQPKQTRFTHPILVHETARGKEAEYMVEEDNTYNIGVLNMNVRNIILTMNVNISAKVYDTTNANNVCFTANGSCRLNLIFPKTYYVILTAPNNLDGDGWNVEVYFLARALSYLLLLGCTMIVIYLILKVLGVSDGDEGNIDEIIAITHRISNIVATQTEIEPLMHGESNRSSYGTNEEDDEEWEASNSSSNELYDGKLCVICYDEQRNSFFVPCGHFVTCYDCSQRIFDGESKRCPICRRLIHKVRLLIHS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0116 369 SUPERFAMILY RING/U-box 307 363 - -
Lal17g0116 369 SMART ring_2 317 356 IPR001841 -
Lal17g0116 369 Pfam Zinc finger, C3HC4 type (RING finger) 315 363 - -
Lal17g0116 369 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 368 - -
Lal17g0116 369 MobiDBLite consensus disorder prediction 284 306 - -
Lal17g0116 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 367 IPR013083 -
Lal17g0116 369 PANTHER OS05G0521000 PROTEIN 3 368 IPR044586 GO:0004842
Lal17g0116 369 Pfam Domain of unknown function (DUF4793) 141 243 IPR032010 -
Lal17g0116 369 Pfam Domain of unknown function (DUF4792) 48 116 IPR032008 -
Lal17g0116 369 ProSiteProfiles Zinc finger RING-type profile. 317 357 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0116 302 363 C3H Transcription Factor Family AT3G06140 33.871 1.01e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0116 - - gmx:100794488 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0116 17 716297 718973 Lal17g0116 17 716297 718973 ECH