Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0108 ATGGCGTTTTCAGGAACAACCCAGAAATGCATGGCTTGTGACAAAACAGTTTATCTTGTTGATAAGTTAACTGCGGATAACCGAGTTTATCACAAAGCTTGCTTTAGGTGCCACCACTGCAAAGGAACCCTCAAGGGTGGATCTATTCTGCCCCCTCCCTTTTTTGTTTTCATGAATAAGTTAATTGAGAGATTAATTTATCTGCAGCTTAGCAACTATAACTCTTTTGAGGGGGTTCTATACTGCAGGCCACACTTTGACCAATTGTTCAAAAGAACTGGCAGCCTTGACAAAAGTTTTGAAGGTACACCAAAAATTGCTAAACCTGAAAAAGCCAGTGATAATATGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGTGGAACCAGAGATAAATGTGCTGGTTGTCAGAAAACAGTGTATCCAATTGAGAAGGTTACTGTGAATGGAACTCCATACCACAAGAGTTGTTTCAAATGCAGTCATGGAGGATGTGTTATAAGTCCTTCCAATTACATTGCACACGAGGGCAAACTCTACTGTAAACACCATCATATTCAATTGATCAAGGAGAAAGGCAATTTAAGCCAGCTTTAA 600 0.4 MAFSGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKGGSILPPPFFVFMNKLIERLIYLQLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKASDNMKPAAAKVSSMFGGTRDKCAGCQKTVYPIEKVTVNGTPYHKSCFKCSHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0108 199 ProSiteProfiles LIM domain profile. 132 192 IPR001781 -
Lal17g0108 199 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 159 - -
Lal17g0108 199 CDD LIM1_SF3 6 92 - -
Lal17g0108 199 Pfam LIM domain 10 48 IPR001781 -
Lal17g0108 199 Pfam LIM domain 134 188 IPR001781 -
Lal17g0108 199 ProSiteProfiles LIM domain profile. 8 92 IPR001781 -
Lal17g0108 199 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE 68 199 - -
Lal17g0108 199 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE 1 48 - -
Lal17g0108 199 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lal17g0108 199 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lal17g0108 199 PANTHER OS06G0237300 PROTEIN 1 48 IPR045268 GO:0051015
Lal17g0108 199 PANTHER OS06G0237300 PROTEIN 68 199 IPR045268 GO:0051015
Lal17g0108 199 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 160 198 - -
Lal17g0108 199 SMART lim_4 133 185 IPR001781 -
Lal17g0108 199 SMART lim_4 9 85 IPR001781 -
Lal17g0108 199 CDD LIM2_SF3 134 194 - -
Lal17g0108 199 Gene3D Cysteine Rich Protein 129 198 - -
Lal17g0108 199 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 67 100 - -
Lal17g0108 199 Gene3D Cysteine Rich Protein 3 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0108 Lal-Chr17 674529 676317 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lal17g0108 LIM 5.7e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0108 K09377 - cpap:110808420 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0108 17 674529 676317 Lal17g0108 17 674529 676317 ECH