Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0103 ATGGTGGGAGCATACGAGGAGAGTCGTCAGAAAAGGTTGGAAGAGAACAAGAAGAGAATGGAGGCACTTAATCTTCATCAGCTTTCTCAATCCTTACATAAGCCCCATTTCTCACCTGCCAAATTTCGCATCACTCCTAAACCCAAACCCAAACCCAATCACTTTCTTGTCCCAAGGAGATCCACCCGTGTTGCCAATCTTCCCACTCCTCTTTACAAAGAAGTTGTTGTTGATCGCGTCACAATACCCAGGAGAAGTTACAATAGGCACAGGGATTATTCGAAGCGGGTTTATGCTTCTGATGAAGCTAGAGAGGAAGCCTTAGAGAAAGCAAACAAGTTGGAGTCTGATTTAGGCACTCATTCTCCCACCTTTGTTAAGACAATGCTCCAATCTCATGTCAGCGGTGGATTCTGGCTCGGACTTCCAGTTCACTTCTGCAAGGGAAACCTACCTAAAGGGGATGAAGTAATGAATTTGATTGATGAGGATGGGAATGAATATCCGACAATTTATTTGGCTCGAAAAACTGGACTTAGTGGTGGATGGAAAGGTTTTGCGGTTGCTCATGACCTAGCAGATGGGGATGCTTTAGTTTTTCAACTAATCAAGCGCACTGCATTCAAGGTGTACATTATTAGGGTGAACGGTCCTGCAGAGGAGGGTTAG 669 0.4484 MVGAYEESRQKRLEENKKRMEALNLHQLSQSLHKPHFSPAKFRITPKPKPKPNHFLVPRRSTRVANLPTPLYKEVVVDRVTIPRRSYNRHRDYSKRVYASDEAREEALEKANKLESDLGTHSPTFVKTMLQSHVSGGFWLGLPVHFCKGNLPKGDEVMNLIDEDGNEYPTIYLARKTGLSGGWKGFAVAHDLADGDALVFQLIKRTAFKVYIIRVNGPAEEG 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0103 222 Gene3D - 99 217 IPR015300 -
Lal17g0103 222 SUPERFAMILY DNA-binding pseudobarrel domain 120 216 IPR015300 -
Lal17g0103 222 CDD B3_DNA 123 214 IPR003340 GO:0003677
Lal17g0103 222 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 218 IPR044837 -
Lal17g0103 222 Pfam B3 DNA binding domain 125 214 IPR003340 GO:0003677
Lal17g0103 222 ProSiteProfiles B3 DNA-binding domain profile. 125 216 IPR003340 GO:0003677
Lal17g0103 222 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 4 218 - -
Lal17g0103 222 SMART B3_2 125 216 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0103 Lal-Chr17 642190 645775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0103 50 220 B3 DNA Binding Superfamily AT5G42700 58.480 8.38e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal17g0103 B3 2.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0103 - - gmx:100797091 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0103 17 642190 645775 Lal17g0103 17 642190 645775 ECH
Lal17g0103 17 642190 645775 Lal21g0190 21 1255861 1261779 LSH