Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0096 ATGGAAGGAATGAACAGAAGCTCACCTACCACTACCTCTTCCTCATATTCTTCCTCTTCAGAATCCAACCACTTCCCTAGAAACCCAAACAGACACGAAAGAATCAAAGGCCCATGGAGCGCTGAAGAGGACCGTATTCTCACCCAACTTGTGGAACGATACGGTCCCAGAAACTGGTCTTTGATTAGCCGTTACATAAAAGGAAGGTCCGGTAAGTCTTGCAGGCTGCGGTGGTGCAACCAGCTGAGCCCCGCCGTTGAGCACCGTCCCTTCTCCGCCCAAGAGGATGACACCATCATAGCCGCACATGCCCAGTACGGTAACAGGTGGGCCACCATTGCACGGTTACTACCCGGTAGGACCGATAATGCAGTGAAGAACCATTGGAATTCAACGTTGAATCGAAGAAACATAGAGCAACAACGTGGTTCATTTGATGCGATAACTACTACTATCGGAGAGAGGGGAATTTCTTCGTCGGGACCTGTGTCTGTGGAGGAGGACCCGTTGACCGTGTTGACTCTTGCTCCGCCGGGGATTGATAATGGTGGTGGTGTGGAGGAGGTGAGACTGTCGCCGGAAGAGGGTGTGCCGTCGGGGTTTTGGGATATGATGAGAGATGTTATTAATAGGGAAGTGAGGGAATATGTGACTTCTAATTTTTCTGATTTTCATTGA 678 0.5 MEGMNRSSPTTTSSSYSSSSESNHFPRNPNRHERIKGPWSAEEDRILTQLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSAQEDDTIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLNRRNIEQQRGSFDAITTTIGERGISSSGPVSVEEDPLTVLTLAPPGIDNGGGVEEVRLSPEEGVPSGFWDMMRDVINREVREYVTSNFSDFH 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0096 225 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 212 - -
Lal17g0096 225 MobiDBLite consensus disorder prediction 1 25 - -
Lal17g0096 225 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Lal17g0096 225 SMART sant 35 84 IPR001005 -
Lal17g0096 225 SMART sant 87 135 IPR001005 -
Lal17g0096 225 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Lal17g0096 225 MobiDBLite consensus disorder prediction 1 37 - -
Lal17g0096 225 Gene3D - 35 87 - -
Lal17g0096 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 86 IPR017930 -
Lal17g0096 225 SUPERFAMILY Homeodomain-like 34 129 IPR009057 -
Lal17g0096 225 Gene3D - 90 148 - -
Lal17g0096 225 CDD SANT 38 80 IPR001005 -
Lal17g0096 225 Pfam Myb-like DNA-binding domain 39 97 - -
Lal17g0096 225 CDD SANT 90 133 IPR001005 -
Lal17g0096 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 137 IPR017930 -
Lal17g0096 225 PANTHER MYB PROTEIN-RELATED 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0096 Lal-Chr17 600397 601074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0096 28 200 MYB Transcription Factor Family AT4G37260 56.250 2.48e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal17g0096 Myb_DNA-bind_6 7.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0096 - - lang:109327990 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0096 17 600397 601074 Lal17g0096 17 600397 601074 ECH
Lal17g0096 17 600397 601074 Lal21g0182 21 1183934 1184611 LSH
Lal17g0096 17 600397 601074 Lal4g0114 4 700521 701237 LSH