Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0093 ATGCAGGCTTTAGGCTGCTCTCTGGTTCTTTTCTTATTCCTCATATTATCATTCTCATCATTATCCTTTGCACTTACCAATGTTGAAGCCTCATTCATTGCTCGTCGCCAATTGTTACACCTTCATGAAAACGAGGAATTATCCGAGTCCTATGTAGAAAACTATAAAACAGATCTAAAATTTGATAACCCAAGGCTGAAAGGTGCATACATTGCATTTGAGGCATGGAAAAAAGCAATATATTCTGACCCATCAAACATCACATCTGATTGGGTGGGAGCAAATGTTTGCTCCTACAAAGGAGTTTATTGTGCCCCTGCCCTTGATGATCCTAAGATCGAAGTTGTGGCTGGGATTGATCTTAACCATGCAGACATTGCTGGTTACATTCCTCCCGAGTTTGGTTTGTTAACTGATCTTGCTCTTCTGCATATCAACTCAAACAGGTTTTGTGGTGTACTACCAAAGAGCTTATGCAATCTAAAACTTATGTATGAACTTGATATCAGTAACAATCGTTTCGTAGGTCCATTCCCTCAACCCATTCTTTGCCTTCAAGATATCAAATATATTGACCTTAGGTTTAATGACTTTGAAGGGGAACTACCTTCTGAGTTGTTTAACAAGACACTTGATGCTATCTTTGTGAACAGCAATAGATTTGTGTCTACAATTCCAGAGAACCTAGGGAACTCACCAGCTTCAGTTATTGTCTTGGCTAATAACCATTTCAACGGGTGCATACCTAGAAGCATTGGGCAAATGGACAAGACCTTGAACGAGTTTGTGTTGGTCAATAACAACATCTCTGGGTGTTTACCCGATGAGATTGGAAAGCTTTCCAACATTGAGGTGTTTGATGTGAGTCACAACATGCTTGTTGGGGTGTTGCCAAATACCTTTTGTGAACTCGGAAAGGTGGAAGAGTTATCCATTGCTAACAACAAGCTCACAGGTTATGTATCACATAGCATTTGTAGCTTGCCTGGTTTGGTGAACTTCACATTCTCTGATAACTATTTCAATGTGGAGGAAGAAGGTTGTGTGCCTAAATCTAGAAAGAATATTGATTTGAATGATGAGAGGAATTGCATTCCTGGTAGGCCAAAACAGAAGGGGGAAAGTGAATGCAATGCTGTCATAAGCAAAGCTGTTGATTGTAGCAAGGCTCAATGTGGTCACCCATCAACCTCATCTCATTCCAATAATCCTCCATCTCAACCACAACCCAACCCTACTCCGCCTCAAGAGGAGGATCCTCACAAAGAAGCACCCCGAGAACGACCAAGGACTCCTCCACTTATTAGGCATTCTCCTCCTCCACCTGTCCACTCTCCACCACCACCACCACCCCCGCCACATGTGAACTTCCCACCACCCCCTGTCCGCTTACTACCACCACCCCCTGTCCACTCACCACCACCACCACCACCGGTTCATTCACCGCCACCACCAGTATATTCTCCCCCTCCACCAGTTCACTCTCCACCACCACCAGTCCATTCACCCCCTCCACCAGTTTACTCTCCACCACCACCAGTGCATTCACCCCCTCCACCAGTTCACTCTCCACCACCACCAGTCCATTCTCCTCCTCCACCAGTTCACTCTCCACCACCACCACCACCCGTCCACTCTCCACCACCTCCAGTACATTCTCCTCCACCACCAGTACAATCCCCTCCTCCACCACCAGTACAATCCCCTCCTCCACCTGTCCGATCTCCACCACCACCACCACCAACAGTTTCATCTCCGCCTCCTCCAGAAGAAGAAGAAGACATTATTCTTCCACCTCACTTTGGCTCTTCATATGCTTCACCTCCTCCACCAATCATTGCTGGCTACTAA 1851 0.4581 MQALGCSLVLFLFLILSFSSLSFALTNVEASFIARRQLLHLHENEELSESYVENYKTDLKFDNPRLKGAYIAFEAWKKAIYSDPSNITSDWVGANVCSYKGVYCAPALDDPKIEVVAGIDLNHADIAGYIPPEFGLLTDLALLHINSNRFCGVLPKSLCNLKLMYELDISNNRFVGPFPQPILCLQDIKYIDLRFNDFEGELPSELFNKTLDAIFVNSNRFVSTIPENLGNSPASVIVLANNHFNGCIPRSIGQMDKTLNEFVLVNNNISGCLPDEIGKLSNIEVFDVSHNMLVGVLPNTFCELGKVEELSIANNKLTGYVSHSICSLPGLVNFTFSDNYFNVEEEGCVPKSRKNIDLNDERNCIPGRPKQKGESECNAVISKAVDCSKAQCGHPSTSSHSNNPPSQPQPNPTPPQEEDPHKEAPRERPRTPPLIRHSPPPPVHSPPPPPPPPHVNFPPPPVRLLPPPPVHSPPPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPPPVHSPPPPVHSPPPPVQSPPPPPVQSPPPPVRSPPPPPPTVSSPPPPEEEEDIILPPHFGSSYASPPPPIIAGY 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0093 616 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 540 - -
Lal17g0093 616 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2 1 540 - -
Lal17g0093 616 MobiDBLite consensus disorder prediction 416 433 - -
Lal17g0093 616 SUPERFAMILY L domain-like 78 343 - -
Lal17g0093 616 MobiDBLite consensus disorder prediction 389 616 - -
Lal17g0093 616 Gene3D Ribonuclease Inhibitor 237 368 IPR032675 -
Lal17g0093 616 Pfam Leucine rich repeat 258 317 IPR001611 GO:0005515
Lal17g0093 616 Gene3D Ribonuclease Inhibitor 71 236 IPR032675 -
Lal17g0093 616 PRINTS Proline rich extensin signature 403 415 - -
Lal17g0093 616 PRINTS Proline rich extensin signature 421 442 - -
Lal17g0093 616 PRINTS Proline rich extensin signature 445 461 - -
Lal17g0093 616 PRINTS Proline rich extensin signature 465 482 - -
Lal17g0093 616 MobiDBLite consensus disorder prediction 434 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0093 Lal-Chr17 581872 583722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0093 4 393 Trihelix Transcription Factor Family AT3G19020 59.487 3.18e-168 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0093 - - gmx:100780677 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0093 17 581872 583722 Lal21g0170 21 1130486 1132927 LSH
Lal17g0093 17 581872 583722 Lal4g0111 4 686385 688919 LSH