Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0085 ATGACAGAAACATATAATCCTTTACTTTCACCAATGGCAGCTTCTGGAGAAGCTAGCTTCTCATCTTCTACCTTAAACAGCGCGTCCCAACCACCGCCTAAAAAGAAGCGAAACCTTCCCGGAATGCCTGATCCAGATGCTGAGGTAATTGCTTTGTCGCCGACTACACTAATGGCGACGAACCGTTTTGTGTGCGAGATCTGCAACAAGGGATTCCAACGAGAACAGAACTTACAGCTTCATCGGAGAGGACATAACTTACCGTGGAAGCTGCGGCAGCGATCAGGAAATGAAGTTCGGAAGAAAGTATACGTGTGTCCAGAACCGTCGTGCGTGCACCACCACGCGTGTAGGGCGCTTGGTGACCTCACCGGAATAAAGAAGCACTTTAGCAGAAAACACGGAGAGAAGAAGTGGAAATGCGAGCGTTGCTCCAAGAAATATGCCGTACAATCTGATTGGAAAGCTCATATCAAGACTTGTGGAACTAAAGAGTATAAATGTGACTGTGGCACCTTCTTCTCTAGGAGGGATAGCTTCGTAACGCACAGAGCTTTTTGTGATGCATTAGCGGAAGAGGCTAGAGCACAAACCCTAACCGCCGTTAGCAAGGATGGTGTTATGGCTACTTCTTCGCCGCCGCTACCGCCGCTTACTCCGTCAACCTCTGTGCTCTCTCCAACTTTGTCCATTCAAAGCTCCGAAATTCCAGAAAACCCAAAGAGGATGTCGCCGCCGCCATCGAACGCCGTGGACACCGGCAACACTTCCATTGTGATGGCATCCTCAACCACATCAGTTCCATCATCATTCTCCAATCTCATCTCAAGCATTTCAGCACTAGAACGCACTTCCCTCTCCCTCTCCACATCATCACCCTTTAACTCATCATCCCTATTCCATGATCCACACTACACTACTGCAACAGTTGCATCTCCACAACCTGCATTGTCTGCAACTGCATTACTCCAAAAGGCAGCTCAAATGGGTTCATCTTCATCCAATGCATCATTGTTTCATGCTTTAGGCCTAACAACATCATCATCATCTAACTCTAGCCAAGATCACATCACAACAATGCCATGGAATACCCTAATCCATATAAAGCAAGAGGATATTAATCACACTCTGCCACATAATCTGGGGCTTGGACTTGCCTCTGGGAATAGTAATGCAGGTTTTGCAGATGTAATGATGCGCTCTTCATCTGACCCATTTGGTGGTCCCGGTCAACCCACCATGACCCGTGATCTTCTTGGTCTAAGCATCGGTAATGGGGCTAGTCTTCCTTCTTTCTTCACCTCTTTCGGAGGGAACTTCCAAACATCAGGGGATAGAGGTGGTGGAGCTGGCCAGTAG 1359 0.479 MTETYNPLLSPMAASGEASFSSSTLNSASQPPPKKKRNLPGMPDPDAEVIALSPTTLMATNRFVCEICNKGFQREQNLQLHRRGHNLPWKLRQRSGNEVRKKVYVCPEPSCVHHHACRALGDLTGIKKHFSRKHGEKKWKCERCSKKYAVQSDWKAHIKTCGTKEYKCDCGTFFSRRDSFVTHRAFCDALAEEARAQTLTAVSKDGVMATSSPPLPPLTPSTSVLSPTLSIQSSEIPENPKRMSPPPSNAVDTGNTSIVMASSTTSVPSSFSNLISSISALERTSLSLSTSSPFNSSSLFHDPHYTTATVASPQPALSATALLQKAAQMGSSSSNASLFHALGLTTSSSSNSSQDHITTMPWNTLIHIKQEDINHTLPHNLGLGLASGNSNAGFADVMMRSSSDPFGGPGQPTMTRDLLGLSIGNGASLPSFFTSFGGNFQTSGDRGGGAGQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0085 452 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 13 445 - -
Lal17g0085 452 Gene3D Classic Zinc Finger 98 187 - -
Lal17g0085 452 Gene3D Classic Zinc Finger 59 86 - -
Lal17g0085 452 MobiDBLite consensus disorder prediction 1 47 - -
Lal17g0085 452 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 445 - -
Lal17g0085 452 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Lal17g0085 452 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Lal17g0085 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Lal17g0085 452 MobiDBLite consensus disorder prediction 1 33 - -
Lal17g0085 452 Pfam Zinc-finger double-stranded RNA-binding 63 85 IPR022755 -
Lal17g0085 452 SMART c2h2final6 104 134 IPR013087 -
Lal17g0085 452 SMART c2h2final6 63 85 IPR013087 -
Lal17g0085 452 SMART c2h2final6 139 159 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0085 Lal-Chr17 521615 524541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0085 14 426 IDZ Gene Family AT3G50700 51.826 1.78e-130 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal17g0085 zf-C2H2_jaz 4.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0085 K25869 - lang:109339499 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0085 17 521615 524541 Lal17g0085 17 521615 524541 ECH