Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0066 ATGCATAAGCATGGTTTTAGTAACATTTGTTGGTTTCTGATGGATGATCCTGGTCATCGTGAAAATGGAAGACACAAACCAGATCAATATAAATCTGCTCAAGGACAGTGGTTGATGCAACATCAGCCTTCCATGAAACAGATTATGGCACTTATGGCTGAAAGAGATGCAGCAGTTCAAGAAAGAAATCTGGCTCTTTCTGAGAAAAAGGCAGCACTTGCAGAGCGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCAGAACGAAATAATGCAATCATGGAACGAGATAACGCAATTGCAGCTCTTCAATATCGAGAGAGCTCCTTAACTAGCGGTAGCATGTCATCATGTCCTCCAGGATGCCAAATCTCACGTGGTGTCAAGCATGTACATCATCCTCAGCAACAGGTGCACCACTTACACAATATGGATGATGCTTCTTACGGCACACGGGATATGCACACAACTGACTCCCTCCCAGAAGCACACATCCCTTTGGAGGCTGGGAAATCACGACGGGCCAAACGACCAAAGGAAGCTAAGTCAATTTCAACCAATAAGAAGACTTCAAAAACTGCCAGAAAGGACAAGATGGAGAGTGAAGACTTGAATGACTTGATGTTTGGCAAGACACACGAGTGGAAGAGTGGTCAGGAAATGGTTAATGGAGGGGGTGATCTTGACAAGCAGCCAGTGGTGTCCAAGGCTGATTGGAAAGGCCAGGACTTGGGGTTAAATCAGGTGGCATATGACGAGTCTACCATGCCGGCTCCAGTTTGCTCTTGTACCGGTGTTCTGAGGCAGTGCTACAAATGGGGTAATGGGGGTTGGCAGTCTGCTTGTTGCACAACAACCCTGTCAATGTATCCACTTCCTGCAGTGCCCAACAAGAGGCATGCCCGGGTTGGAGGTCGGAAGATGAGTGGTAGCGCTTTCAATAAGCTGCTTAGTCGGCTTGCTGCGGAAGGTCATGATCTGTCAAACCCTGTTGACCTCAAGGACCATTGGGCCAAACATGGTACAAATCGATACATCACAATAAAGTAG 1053 0.471 MHKHGFSNICWFLMDDPGHRENGRHKPDQYKSAQGQWLMQHQPSMKQIMALMAERDAAVQERNLALSEKKAALAERDMAFLQRDTAIAERNNAIMERDNAIAALQYRESSLTSGSMSSCPPGCQISRGVKHVHHPQQQVHHLHNMDDASYGTRDMHTTDSLPEAHIPLEAGKSRRAKRPKEAKSISTNKKTSKTARKDKMESEDLNDLMFGKTHEWKSGQEMVNGGGDLDKQPVVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0066 350 Coils Coil 64 84 - -
Lal17g0066 350 PANTHER - 14 350 IPR010409 -
Lal17g0066 350 Pfam GAGA binding protein-like family 14 350 IPR010409 -
Lal17g0066 350 PANTHER PROTEIN BASIC PENTACYSTEINE6 14 350 - -
Lal17g0066 350 SMART GAGA_bind_2 14 350 IPR010409 -
Lal17g0066 350 MobiDBLite consensus disorder prediction 170 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0066 Lal-Chr17 385941 389213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0066 78 350 BBR or BPC Transcription factor family AT5G42520 65.517 8.18e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Lal17g0066 GAGA_bind 1.5e-107 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0066 17 385941 389213 Lal17g0066 17 385941 389213 ECH
Lal17g0066 17 385941 389213 Lal21g0124 21 849913 853241 LSH
Lal17g0066 17 385941 389213 Lal4g0078 4 462096 465423 LSH