Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0061 ATGTCTTCTTCCGGCGAGGATCACCCTCCACATCAATTCCAATTTCAACTCTTAAATCCTCTTTCTCTAAATAATCATATTCCTATCTTTTCTCCTCTTCACCTTCATCCTCATTTATCATCCCTCTCCTTGACCCCAAAATATGAAGTTAGTAATTTCATGCCTCAGACAAGTACTACTGAAGCATCTCCTGTCTTGAGCAGAACAGTTAATCTTTCTCCACTTCAAACTGAACCCGTCATTGGAGGAAGGCATCAAAATAAATCCAAAGTTTCAAGAAAATCTGGGATTAACAAATCAAATATAGAATCTCCTAATTTGGCTGCAGTTAACAATTGTCGTTACGACAGTTCCTTAGGATTGTTGACGAAGAAATTTGTCAGCTTGATCCATGAGGCTAAGGATGCTACCTTGGATCTAAATAAATCGACTGAGATATTGCAGGTCCAAAAAAGGAGGATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATTGAGAAAACTTCAAAGAACCATATACGGTGGAAGGCATATGATGGATTTGGGCAACGCGATCTGGATGATCAAGTTACTAGACTAAAGGCTGAGGTTGAAAGTCTATATGCTGAGGAATTCAACCTTGATGAATGTATAAGGAAAAATCAAGAGCTTCTAAGAAACCTGCAAGAAAGAAAAAACTCTCAAAAATACCTTTTCGTTACCAAAGAAGATATTCTTAGCCTTCCATGCTTCCAGGATCAAGACCTTATTGCAATCAAGGCTCCGCAAGCTAGCTTCATTGAGGTCCCTGATCCAGACGAGGAAATAGGTTTCCGACAAAAGCAGTACAAAATGACTGTTAGAAGTGCAACTGGACCGATATCTTTGCACCTCTTAAGAAGCAAGCGGAAAAGCAAATTTGAGGATGGCAGTATCAAGCAGGTTCAATTAATAGATCAATCATGGAGTGGTGACCACTGCAGAATGAGGAGTGTAGGACTATTAGAAAGCCGGGATGATCAGCAAAATGCTCTTCAAAGTTACCAATCTTTGAGCTCAGAGGAATTTGAAATTCAAGAAATTACTCCTCAGGATTGTGAAACCGATGATGACTATTGGTTTCAAACAGATCCTGGAGTGGGCCTAACAGATTTGTGGGGTGGCAGTAACTTCTAA 1161 0.3945 MSSSGEDHPPHQFQFQLLNPLSLNNHIPIFSPLHLHPHLSSLSLTPKYEVSNFMPQTSTTEASPVLSRTVNLSPLQTEPVIGGRHQNKSKVSRKSGINKSNIESPNLAAVNNCRYDSSLGLLTKKFVSLIHEAKDATLDLNKSTEILQVQKRRIYDITNVLEGIGLIEKTSKNHIRWKAYDGFGQRDLDDQVTRLKAEVESLYAEEFNLDECIRKNQELLRNLQERKNSQKYLFVTKEDILSLPCFQDQDLIAIKAPQASFIEVPDPDEEIGFRQKQYKMTVRSATGPISLHLLRSKRKSKFEDGSIKQVQLIDQSWSGDHCRMRSVGLLESRDDQQNALQSYQSLSSEEFEIQEITPQDCETDDDYWFQTDPGVGLTDLWGGSNF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0061 386 SUPERFAMILY E2F-DP heterodimerization region 190 294 IPR037241 -
Lal17g0061 386 CDD E2F_DD 190 294 IPR032198 GO:0046983
Lal17g0061 386 MobiDBLite consensus disorder prediction 78 98 - -
Lal17g0061 386 SUPERFAMILY "Winged helix" DNA-binding domain 114 177 IPR036390 -
Lal17g0061 386 PANTHER TRANSCRIPTION FACTOR E2FC 40 382 - -
Lal17g0061 386 Pfam E2F transcription factor CC-MB domain 195 294 IPR032198 GO:0046983
Lal17g0061 386 Coils Coil 209 229 - -
Lal17g0061 386 Gene3D - 109 181 IPR036388 -
Lal17g0061 386 Gene3D - 186 296 - -
Lal17g0061 386 Coils Coil 185 205 - -
Lal17g0061 386 Pfam E2F/DP family winged-helix DNA-binding domain 116 178 IPR003316 GO:0005667|GO:0006355
Lal17g0061 386 SMART E2F_TDP_2 114 179 IPR003316 GO:0005667|GO:0006355
Lal17g0061 386 PANTHER TRANSCRIPTION FACTOR E2F 40 382 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0061 Lal-Chr17 356650 361275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0061 61 386 E2F-DP Transcription Factor Family AT1G47870 48.012 8.56e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lal17g0061 E2F_CC-MB 7.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0061 K06620 - gmx:100797301 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0061 17 356650 361275 Lal17g0061 17 356650 361275 ECH