Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0053 ATGACAATAAATGTAAATACAACATTCTACTACTGTATTACATCTCATTATCATTCCTCCAGTGAATGCAAAATAATGGCCAAAGTCATGTTTATTTTGGCTACCTTCTTTGTATTATGCTGTTTCACAATCAATGCTAGTGCCTTTGCACCTTCTCCATGGACCAGAGCCCATGCCACTTTTTATGGAGGTAGTGATGCATCAGGAACAATGGGAGGAGCTTGTGGTTACGGGAATCTGTATTCAGCAGGATATGGGACTAGAACTGCGGCATTAAGTACTGCTTTATTTAATGATGGAGCTTCGTGTGGACAATGCTACAAAATCATATGTGATTATCAAGCAGACCCCAGATGGTGCATAAAAGGAAGATCTATTACCATAACTGCCACAAACTTTTGCCCACCAAATTTTGATCTTCCCAACAATAATGGTGGGTGGTGTAACCCACCTCTCATGCACTTCGATATGGCTCAACCTGCTTGGGAAAAGATTGGTATTTACAGAGGAGGGATCGTGCCCGTGTTGTTCCAAAGGGTTCCATGCAAAAAGCATGGAGGGGTTAGGTTCAGTGTGAATGGAAGAGACTACTTTGAGCTAGTATTGATAAGCAACGTGGCAGGTGCTGGATCAATCCAATCTGTGTCAATTAAAGGCTCAAAAACTGGGTGGATGGCTCTGTCAAGAAACTGGGGTGCTAATTGGCAATCACTTGCATATTTGAATGGCCAATCATTGTCCTTCAGGGTTATAACCACAGATGGAGTAACTAGACTTTTCCAAGATGTGGTTCCACCAAATTGGGCATTTGGCCAAACTTTCTCTAGCAAAGTCCAGTTTTAG 843 0.4211 MTINVNTTFYYCITSHYHSSSECKIMAKVMFILATFFVLCCFTINASAFAPSPWTRAHATFYGGSDASGTMGGACGYGNLYSAGYGTRTAALSTALFNDGASCGQCYKIICDYQADPRWCIKGRSITITATNFCPPNFDLPNNNGGWCNPPLMHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNVAGAGSIQSVSIKGSKTGWMALSRNWGANWQSLAYLNGQSLSFRVITTDGVTRLFQDVVPPNWAFGQTFSSKVQF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0053 280 SUPERFAMILY PHL pollen allergen 184 276 IPR036749 -
Lal17g0053 280 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 197 276 IPR007117 -
Lal17g0053 280 SMART dpbb_1 89 177 IPR007112 -
Lal17g0053 280 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 187 IPR007112 -
Lal17g0053 280 Pfam Lytic transglycolase 89 176 IPR009009 -
Lal17g0053 280 SUPERFAMILY Barwin-like endoglucanases 53 205 IPR036908 -
Lal17g0053 280 Pfam Expansin C-terminal domain 188 265 IPR007117 -
Lal17g0053 280 PANTHER EXPANSIN 29 280 - -
Lal17g0053 280 Gene3D - 40 183 IPR036908 -
Lal17g0053 280 PRINTS Expansin signature 84 98 IPR002963 GO:0009664
Lal17g0053 280 PRINTS Expansin signature 113 124 IPR002963 GO:0009664
Lal17g0053 280 PRINTS Expansin signature 126 136 IPR002963 GO:0009664
Lal17g0053 280 PRINTS Expansin signature 145 162 IPR002963 GO:0009664
Lal17g0053 280 PRINTS Expansin signature 162 175 IPR002963 GO:0009664
Lal17g0053 280 PRINTS Expansin signature 186 198 IPR002963 GO:0009664
Lal17g0053 280 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Lal17g0053 280 PRINTS Expansin signature 233 254 IPR002963 GO:0009664
Lal17g0053 280 PRINTS Expansin signature 262 278 IPR002963 GO:0009664
Lal17g0053 280 PANTHER EXPANSIN-A15 29 280 IPR002963 GO:0009664
Lal17g0053 280 Gene3D - 187 280 IPR036749 -
Lal17g0053 280 PRINTS Expansin/Lol pI family signature 53 68 IPR007118 GO:0005576
Lal17g0053 280 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Lal17g0053 280 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Lal17g0053 280 PRINTS Expansin/Lol pI family signature 170 186 IPR007118 GO:0005576
Lal17g0053 280 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Lal17g0053 280 PRINTS Expansin/Lol pI family signature 262 276 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0053 Lal-Chr17 317718 322580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0053 89 280 Expansin Gene Family AT1G20190 79.167 3.24e-116 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0053 - - gmx:100527629 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0053 17 317718 322580 Lal17g0053 17 317718 322580 ECH