Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0047 ATGTCGATGGTGGAGAGAAGCATAGGCCTTAAGGGTGAGGAAGAGAAGCAGTACCCTCCTCCACTTGCCTCTCATGAGAACTTAGTCAAGGACCCCAATGTGTTCTGGGACACTCTTAGGCGTTTTCACTTTCTTATGGCTACCAAATTTATGATTCCTGTGATCGGAGGAAAGGAGTTGGATTTGCACGTTCTTTACGTTGAGGTTACTAGGAGATGTGGCTATCAAAAGGTGGTTGCTGAGAAGAAATGGAGGGAAGTGGGTAACGTGTTCAACTTCTCAGCTACCACTACTAGTGCTTCTTTTGTGCTGAGGAAGCACTACCTCACTCTCCTTTATCATTACGAACAAGTTCATTTCTTCAAACTTCAGGGTCCGTTGTTCACTCCATCAGCACCAGATGCAGCTTCCACAAGCAACCATTCCTGGAGACCTGACTTAGCTATCGTTCAATACTCCCCTAAGCCGATCAAAGATCATCCTGATTCCCATTCTGAAGATTCTTCATTTAGTTTTGGGGAAGGGACCATCGAGGGAAAATTTGAATGTGGTTATTTAGTGTCTGTGAAACTGGGTTCTGAGGTTTTGAGAGGAGTGCTTTATCATCCAGACCTATCAGTTCCTCCACCACAGGTTCAGCAATATGAGAATGCCGTTGTACCATTCAGTAACAACAACAAACCTAGCAGTTCTGGTAGAAGAAGAAAAAACAAAAGAAGGTGGGACCCCAACTACCCAAAGTCCAATAGGAGTGGCTACAACTTCTTCTTTGCTGAGAAGCATTACAAGCTCAAAGAACTTTACCCAAATAGAGAAAGGGAGTTTACCAAAATGATTGGCCAGTCATGGAATTGTCTTAGCTCGGAAGAAAGAATGGTTTACCAGAACATTGGCTTAAAGGACAAGGAGAGGTACAAGAGAGAAGTGAAGGAGTACAAAGAGAAAATGATGGTTGGACAGAAGCTGGACGTCCATAAATACTGA 984 0.437 MSMVERSIGLKGEEEKQYPPPLASHENLVKDPNVFWDTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRCGYQKVVAEKKWREVGNVFNFSATTTSASFVLRKHYLTLLYHYEQVHFFKLQGPLFTPSAPDAASTSNHSWRPDLAIVQYSPKPIKDHPDSHSEDSSFSFGEGTIEGKFECGYLVSVKLGSEVLRGVLYHPDLSVPPPQVQQYENAVVPFSNNNKPSSSGRRRKNKRRWDPNYPKSNRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNCLSSEERMVYQNIGLKDKERYKREVKEYKEKMMVGQKLDVHKY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0047 327 CDD HMGB-UBF_HMG-box 246 310 - -
Lal17g0047 327 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Lal17g0047 327 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Lal17g0047 327 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 12 321 - -
Lal17g0047 327 Pfam HMG (high mobility group) box 246 313 IPR009071 -
Lal17g0047 327 Gene3D - 20 125 IPR036431 GO:0003677
Lal17g0047 327 SMART hmgende2 245 314 IPR009071 -
Lal17g0047 327 Gene3D High mobility group box domain 229 326 IPR036910 -
Lal17g0047 327 SUPERFAMILY ARID-like 24 128 IPR036431 GO:0003677
Lal17g0047 327 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Lal17g0047 327 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 12 321 - -
Lal17g0047 327 Coils Coil 302 322 - -
Lal17g0047 327 MobiDBLite consensus disorder prediction 218 246 - -
Lal17g0047 327 SUPERFAMILY HMG-box 243 315 IPR036910 -
Lal17g0047 327 SMART bright_3 30 121 IPR001606 GO:0003677
Lal17g0047 327 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 246 313 IPR009071 -
Lal17g0047 327 SMART ARID_2 26 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0047 Lal-Chr17 281122 283895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0047 16 316 ARID Transcription Factor Family AT1G76110 65.472 5.23e-132 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal17g0047 ARID 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0047 - - gmx:100784746 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0047 17 281122 283895 Lal17g0047 17 281122 283895 ECH