Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0041 ATGTATGCGATGTCTGCTATACGACGCGAAGGGAGGCGTTTCGCTCCTCTCATCATCCGATCTTCTCCTTCACTAGATCAAAACCTCATTGGAACACGTTCTATTTCAACTCAAATAGTCAGAAATCGGATGAAGAGTGTGAAGAATATCCAGAAAATCACCAAGGCAATGAAGATGGTTGCAGCCTCAAAGCTGCGAGCTATTCAGACTAGAGCTGAAAATTCACGTGGTCTATGGCAGCCATTTACTGCCCTTCTCGGTGACACTCCTAGTGTTGATGTCAAGAAAAACGTTGTCGTTACCATTTCTTCAGACAAAGGTCTGTGTGGTGGAATCAATTCGACATCTGTCAAGATAAGCAGGGGTTTGAGTAAATTGAATTCTGGGTCTGATAAAGAGACAAAGTATGTCATATTGGGAGAGAAGGCTAAGGCTCAATTGACACGTGACTCAAAGAAAGACATTGAGATCATCATAACGGAGTTGCAGAAAAATCCTTTGAACTATACTCAGGTGTCTGTCCTAGCTGATGACATTCTAAAGAATGTTGAGTATGACGCCTTGAGGATTGTTTTCAACAAGTTTCAATCAGTTGTCTCATTTCTGCCAACAGTGTCAACTGTATTATCTCCTGAGGTTGTGGAGAGAGAGGCCGAGGCTGGGGGAAAGCTTGGAGAGCTGGACTCTTATGAGATTGAAGGCGGTGATACAAAATCAGAAATTCTTCAGAATCTGGCTGAGTTCCAGTTTTCTTGTGTGATGTTCAACGCGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCGAGGATGTCTGCCATGGACAGCTCTAGCAGGAATGCTGGGGACATGCTTGATCGTCTCACCCTTACCTATAACAGGACCCGTCAAGCATCAATTACCACCGAATTGATTGAGATTATCTCTGGAGCTTCTGCGCTAACCGGTTAA 948 0.443 MYAMSAIRREGRRFAPLIIRSSPSLDQNLIGTRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVVVTISSDKGLCGGINSTSVKISRGLSKLNSGSDKETKYVILGEKAKAQLTRDSKKDIEIIITELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFQSVVSFLPTVSTVLSPEVVEREAEAGGKLGELDSYEIEGGDTKSEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALTG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0041 315 CDD F1-ATPase_gamma 36 310 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal17g0041 315 Pfam ATP synthase 38 313 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal17g0041 315 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 36 313 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal17g0041 315 Gene3D - 60 272 - -
Lal17g0041 315 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 38 313 IPR035968 GO:0015986|GO:0045261|GO:0046933
Lal17g0041 315 Hamap ATP synthase gamma chain [atpG]. 34 313 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal17g0041 315 PANTHER ATP SYNTHASE GAMMA CHAIN 3 313 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal17g0041 315 PIRSF ATP_synthase_gamma 10 313 - -
Lal17g0041 315 ProSitePatterns ATP synthase gamma subunit signature. 299 312 IPR023632 -
Lal17g0041 315 PRINTS ATP synthase gamma subunit signature 94 113 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal17g0041 315 PRINTS ATP synthase gamma subunit signature 186 203 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal17g0041 315 PRINTS ATP synthase gamma subunit signature 260 279 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal17g0041 315 PRINTS ATP synthase gamma subunit signature 291 312 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lal17g0041 315 PANTHER BNAA05G10580D PROTEIN 3 313 - -
Lal17g0041 315 Gene3D ATP synthase, gamma subunit, helix hairpin domain 40 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0041 Lal-Chr17 251126 257850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0041 19 313 Primary Pumps ATPases AT1G15700 30.056 1.35e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0041 K02136 - oeu:111401780 533.102