Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0036 ATGAACTTTTCTTCAATGAATGATGATGATGCTGCGTCAGCACTTGGCACTAACATTTTGGATGATGGAACAATCTCAATGGATTTTGATTACATTGATGAACTTTTCTTTGATGGATCTGATTTTCCACCCTTTGACTCTTCATTCTCATGGTCTGCCTTAGAGGAACAGCATGAATCACAAGAAGTGTTTTTTGGAAACCAACAAGACATAGTTAAGGTTCATGATGTTAGTTCTAATCAGCAGTATGAATCTGAAATTCAATCATCTGAAGGGTTTACAAGGTGGTGGATTCCTCCAACACCTAATAATTCAGGACCAGGTTATTCTGTAATGGAAAAGTTAATGATGGCACTCAACTGTGTCCAAGATATGAATAGGAACAAAGATATGCTTATACAAATTTGGGTGCCAGTTAATAGAGGGGGTAAGCAGATTCTCAGTACTAATGATCTTCAATTCTGCCTTGGAACCAGCTCTGCAAACCTGGCTAAGTACCGAGAAATCTCGATGAGATATCAGTTTTCAACCGAGGAGGAGGATTCAAAGGGGTTGGTGGCAGGACTGCCTGGTAGAGTTTTTAGGGAGAAGGTTCCTGAGTGGACTCCAGATGTTAGATTCTTTAGGAGTGATGAATATCCTAGAGTTGACCATGCTCAAGAGTATGAAGTACGCGGAACATTAGCACTTCCAATATTTGAGCAAGGTAGCAGGACTTGCTTGGGTGTTATTGAGGTTGTGATGACTAGCTCACAGATCAACTATCGCTCCGAACTTGAGTGTGTTTCCAAAGCACTTGAGGGTGTTGATCTTAGAAGCTCCAAACTTTCAAGCACTCAGAATGTGAAGGCATGCAGTAAATCGTATGAAGCTGTTCTACCTGAGATTAAAGAGGTGCTGAGAGCTGCATGTGAAATGCACAAATTACCCTTAGCTCAAACATGGATCCCATGCATCCAACAAGGCAAAGAGGGATGCCGTCACTCTGAAGATAATTATTTACACTGCATATCTCCTGTGGAGCATGCTTGCTATGTGAATGATGCTTCTATCCGCGCTTTCCATGATACTTGTTCCGAGCATCACTTGTTAAAAGGACAAGGTGTTGCTGGAGGAGCTTTTATGACAAATCAACCATGCTTCTCAAGTGACATAACCTCTTTAAGAAAGACGGACTATCCACTTTCTCATCATGCAAGAATATTTGGATTGCAGAGTGCAGTTGCTATACGCCTCCGAAGCATTTATAGTAGTACAGATGACTATGTTCTGGAGTTCTTCTTGCCTGTGAATTGTAATGACAGTGAAGAACAGAAAGAAATGCTTACTTCATTGTCCATGATTATTCAAAGCATTTGCCATAGCTTGCGAGTTATAACAGATAAGGAATTGGAGAAGGAAACTAACTTTTCATTTGGTGAACCAATAGCCCTTGCAGATAGTAGATCTGCTAGGACTGAAGAAAAATCAAGTGGAACAATGGTTGGAAAATTATCTGACCTAAAGCAGCTGCAAGATTTGAAAGAAAACCTTGATGGTGCTGGGGAGTGTTCTACTTTTGGTGAGGGTAACTTATCAAGTTTGGTAATAAATAAGACGGGGGAGAAAAAACGGACCAAAGCAGATAAAACTATCACTCTGCAAGTTCTACGGCAATATTTCTCTGGAAGCCTAAAAGATGCTGCAAAGAGCATTGGTGTTTGTACCACAACTTTGAAAAGGATCTGCCGGCAACATGGGATCAAGCGTTGGCCTTCTCGAAAGATAAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCGGTTCAAGGTGCCTCTGGTGCATTTCAAATAGATTCCTTCTACTCAAACTTCCCGGACCTAGCTTCTCCAAATTTATCAGGAACTGGCATGTTATCAACCTTGAAGCAAAGTGATCCAAACTCATTAAGCCCAACGCAGCCTAATCTTGCTGGCTCATTGACACCTGAAGATGCATCAAAATCTATTTCCTCGTCGTGCAGTCAAAATTCTATTTCAAGCCATCCTTGTTCTAGCATGTCAGAGCAACAACATGACACAATTACTGTTGTTGATGATAACAAAGATCTTGTAGTAGTTGGAGAAGATTATACTGATGTTGTATTGAAGAGGATTAGAAGTGAAGCAGAACTAAAAAGCCTTACTCAACAAGATAATAAAATGAATCTATTTCCAAGATCACTAAGCCAGGAAACACTTGTTGAACAACACCCAAAAACCAACAGCATGGCACCTAAAAAGGAGGACTCTCATAGAGTAAAAGTGACATATGGAGATGAGAAAATGCGGTTCCGGATGCTGAAGACTTGGGGTTATGAAGATCTCTTGCACGAAATCTGTTGTAGATTTAACATAAGTGACATGAGCAAATATGATGTCAAGTATTTGGATGATGATTGTGAATGGATTTTACTAACTTGTGATGCTGATTTAGAGGAGTGCATTAATTGTTGTCAATCTTCTGAGTGCAGCACCATCAAACTTTCTCTGCAAGTTTCTAATCTTAGTGTGAGAAGTTCTTTAGAGTTTACATAG 2568 0.4015 MNFSSMNDDDAASALGTNILDDGTISMDFDYIDELFFDGSDFPPFDSSFSWSALEEQHESQEVFFGNQQDIVKVHDVSSNQQYESEIQSSEGFTRWWIPPTPNNSGPGYSVMEKLMMALNCVQDMNRNKDMLIQIWVPVNRGGKQILSTNDLQFCLGTSSANLAKYREISMRYQFSTEEEDSKGLVAGLPGRVFREKVPEWTPDVRFFRSDEYPRVDHAQEYEVRGTLALPIFEQGSRTCLGVIEVVMTSSQINYRSELECVSKALEGVDLRSSKLSSTQNVKACSKSYEAVLPEIKEVLRAACEMHKLPLAQTWIPCIQQGKEGCRHSEDNYLHCISPVEHACYVNDASIRAFHDTCSEHHLLKGQGVAGGAFMTNQPCFSSDITSLRKTDYPLSHHARIFGLQSAVAIRLRSIYSSTDDYVLEFFLPVNCNDSEEQKEMLTSLSMIIQSICHSLRVITDKELEKETNFSFGEPIALADSRSARTEEKSSGTMVGKLSDLKQLQDLKENLDGAGECSTFGEGNLSSLVINKTGEKKRTKADKTITLQVLRQYFSGSLKDAAKSIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPDLASPNLSGTGMLSTLKQSDPNSLSPTQPNLAGSLTPEDASKSISSSCSQNSISSHPCSSMSEQQHDTITVVDDNKDLVVVGEDYTDVVLKRIRSEAELKSLTQQDNKMNLFPRSLSQETLVEQHPKTNSMAPKKEDSHRVKVTYGDEKMRFRMLKTWGYEDLLHEICCRFNISDMSKYDVKYLDDDCEWILLTCDADLEECINCCQSSECSTIKLSLQVSNLSVRSSLEFT 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0036 855 CDD PB1_NLP 762 842 IPR034891 -
Lal17g0036 855 MobiDBLite consensus disorder prediction 636 688 - -
Lal17g0036 855 Gene3D - 757 843 - -
Lal17g0036 855 ProSiteProfiles PB1 domain profile. 761 844 IPR000270 GO:0005515
Lal17g0036 855 Gene3D - 149 255 IPR029016 -
Lal17g0036 855 PANTHER PROTEIN NLP4 56 851 - -
Lal17g0036 855 SUPERFAMILY CAD & PB1 domains 752 842 - -
Lal17g0036 855 Pfam RWP-RK domain 544 592 IPR003035 -
Lal17g0036 855 Pfam PB1 domain 762 843 IPR000270 GO:0005515
Lal17g0036 855 SMART PB1_new 761 844 IPR000270 GO:0005515
Lal17g0036 855 ProSiteProfiles RWP-RK domain profile. 531 612 IPR003035 -
Lal17g0036 855 PANTHER PROTEIN NLP8 56 851 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0036 Lal-Chr17 218903 223412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0036 18 845 NLP Transcription Factor Family AT1G20640 45.767 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lal17g0036 PB1 1.4e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0036 - - lang:109328153 1532.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0036 17 218903 223412 Lal17g0036 17 218903 223412 ECH