Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0033 ATGAAAGGTGGAAAGTCAAAGACCGAGTCTAAGAGAGCCGATCCTAAACTTGCTGTGAATAAGAAGGGTGGCGCCACCACCAAAGGTGCTCGGAAACCAGCGAAGGGAAAGGCGGCTAAGGACCCTAACAAGCCAAAGAGGCCTCCAAGTGCCTTCTTCGTTTTCATGGAGGAATTCAGGAAACAATTCAACAAGGAAAACCCCGACAACAAAGCTGTTTCCGCTGTGGGCAAAGCTGCTGGAGCAAAGTGGAAGACCTTGTCTGAGGCTGATAAAGCACCATATGTCGCAAAAGCGGAGAAACGAAAGCAAGAGTACGCGAAGAGCATGAAAGCATATACCAAGAAGCAGGAAGAAGGTCCTACTGCTACTGAGGAAGAATCTGAGAAGTCATTATCTGAGGTGGAGGATGACGATGAGGACGATGATGATGAGGATGATGATGATGAGTAG 453 0.4812 MKGGKSKTESKRADPKLAVNKKGGATTKGARKPAKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKTLSEADKAPYVAKAEKRKQEYAKSMKAYTKKQEEGPTATEEESEKSLSEVEDDDEDDDDEDDDDE 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0033 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 147 - -
Lal17g0033 150 Pfam HMG (high mobility group) box 45 113 IPR009071 -
Lal17g0033 150 MobiDBLite consensus disorder prediction 94 129 - -
Lal17g0033 150 Coils Coil 96 116 - -
Lal17g0033 150 MobiDBLite consensus disorder prediction 130 150 - -
Lal17g0033 150 MobiDBLite consensus disorder prediction 1 18 - -
Lal17g0033 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 147 IPR031061 -
Lal17g0033 150 MobiDBLite consensus disorder prediction 1 51 - -
Lal17g0033 150 SUPERFAMILY HMG-box 34 124 IPR036910 -
Lal17g0033 150 Gene3D High mobility group box domain 29 136 IPR036910 -
Lal17g0033 150 SMART hmgende2 44 115 IPR009071 -
Lal17g0033 150 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Lal17g0033 150 MobiDBLite consensus disorder prediction 88 150 - -
Lal17g0033 150 CDD HMGB-UBF_HMG-box 45 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0033 Lal-Chr17 186588 188590 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lal17g0033 HMG_box 3.4e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0033 K25507 - lang:109352139 180.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0033 17 186588 188590 Lal17g0033 17 186588 188590 ECH