Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0031 ATGACTCGTCCTTTTAGATTTTTAACCGATGACCACTTCTCGTCTCATTCCTCCGCCACCGCCATCAGATCCGACTACGTCATCATCATCGCTGCCCTCACCTGCGCTTTCATCTGCCTCCTCGGCCTCGTCGCTGTTTCTCGCTGCGCCTGTCTCCGCCGCCTTCATATTTCCTCCACTGCCGCCGCTCCTCAATTTCCTCCTATCCACGCTGACGCCAACAGAGGCGTCAAGAAGAAGGTCCTCCGCTCTCTCCCCAAGCTCACCGCCACCGCTGAATTCGTCCTCAAATTATCCGATTGCGCTATCTGCCTGAGCGAGTTTGCCGCCGGTGAGGAATTTCGAGTGTTGCCTCAGTGTGGTCATGTGTTCCACGTAAGCTGCATCGACACGTGGCTCAAATCACATTCTTCGTGCCCGTCGTGCCGTCAGATTATGGTTGTTTCACGATGCCAGAAGTGCGGTGGTATCCCGGCCTCTGTCAGCTCCGGCTCGACCTCCGCCGCCGTATCGGAAACAGATCCAGATGCGAGATCAAAGATTAGCGAAAAAGAAAGCGATGCTAATAGGTTCTTGGCTTAG 582 0.5481 MTRPFRFLTDDHFSSHSSATAIRSDYVIIIAALTCAFICLLGLVAVSRCACLRRLHISSTAAAPQFPPIHADANRGVKKKVLRSLPKLTATAEFVLKLSDCAICLSEFAAGEEFRVLPQCGHVFHVSCIDTWLKSHSSCPSCRQIMVVSRCQKCGGIPASVSSGSTSAAVSETDPDARSKISEKESDANRFLA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0031 193 MobiDBLite consensus disorder prediction 176 193 - -
Lal17g0031 193 MobiDBLite consensus disorder prediction 159 173 - -
Lal17g0031 193 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 180 - -
Lal17g0031 193 Pfam Ring finger domain 100 143 IPR001841 -
Lal17g0031 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 147 IPR013083 -
Lal17g0031 193 MobiDBLite consensus disorder prediction 159 193 - -
Lal17g0031 193 CDD RING-H2_PA-TM-RING 100 143 - -
Lal17g0031 193 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Lal17g0031 193 PANTHER RING-H2 FINGER PROTEIN ATL8 1 180 - -
Lal17g0031 193 SUPERFAMILY RING/U-box 82 149 - -
Lal17g0031 193 SMART ring_2 101 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0031 Lal-Chr17 178091 178672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0031 5 192 C3H Transcription Factor Family AT1G20823 55.276 3.02e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0031 - - lang:109328101 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0031 17 178091 178672 Lal17g0031 17 178091 178672 ECH