Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0029 ATGTCGCAACAAAATTTCAACTTTGGTATTCAGAAACCTGAACAAGAGCAAAATGTGCGGACGGAATATGCTGCTATTCAGATGGCAGCACCCACTGTTGCTCCTGTTCCAGTTTCTACCGTTAACTTTAACGGTGCTTTCGGGCATGGCCATGTGGGTAGCTCGGAACCTGTTAAAAGGAAGAGAGGAAGGCCAAAGAAAAATGAATCCAACGGTCCCATTGCCTCTCCTCCGTCAGTTATGGTGACCGCTGCTCCGGCAGTTGTACATTTTGCTCCTCCTACTGCTTCCTCATCTCCTTTTGCTCCCTTTGCTCATGCTGCTGCTACTGCTGCTTATGCCACTCCTTTTTCCCCTGCTGCACCTGCTCCTGCTCCTGCTCCTGCTGCTGGTGCTCCCGCATCAACAGTTCCCGTGAAAAAGAGAGGCAGACCTCGCGGTTCTCTCAATAAGCAACGACGCGTCAATGAACCAGGTCCAGAATTTCCATTGACCCCTCATGTTATCACCGTGAAAGCTGGAGAGTGTCTTGCGACGAAGATTGTGGCCCTTTCGCTGGATGTACGCAGCAATGTTTGCATATTGTCTGCAAACGGAGCTATTTCTCGGGTGACACTCCGTCAGCCCTCATCTGGATCCGTGACATATGAGGGTCGCTTTGAGATCCTTACACTCGGTGGCTCTTTACTTCTCTATGATAATAACGGTCCATCCCACAGATCTAGTGGACTAAGTGTCTCCTTGTCTGGGCCAGATGGTCATGTTGTGGGAGGTGGCATTATGGGTGAACTGATTGCTGCTTCCGCTGTCCAGGTTGTTTTGTTGAGCTTTCCTGGTGAGTATTGCAATGTGCCCAAGTTGGCAAACCAAATGGGGAATTCATCTGCCTCACCAAAGTTTGCCACTGCTGGCCAAAGCAGCTCACCGTCACAGGGCACACTTAGTGAATCGTCTGATGGACCTGAGAGCCCTCACAACCCAAGCTCCTGA 990 0.5051 MSQQNFNFGIQKPEQEQNVRTEYAAIQMAAPTVAPVPVSTVNFNGAFGHGHVGSSEPVKRKRGRPKKNESNGPIASPPSVMVTAAPAVVHFAPPTASSSPFAPFAHAAATAAYATPFSPAAPAPAPAPAAGAPASTVPVKKRGRPRGSLNKQRRVNEPGPEFPLTPHVITVKAGECLATKIVALSLDVRSNVCILSANGAISRVTLRQPSSGSVTYEGRFEILTLGGSLLLYDNNGPSHRSSGLSVSLSGPDGHVVGGGIMGELIAASAVQVVLLSFPGEYCNVPKLANQMGNSSASPKFATAGQSSSPSQGTLSESSDGPESPHNPSS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0029 329 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 20 320 IPR039605 GO:0003680
Lal17g0029 329 SUPERFAMILY AF0104/ALDC/Ptd012-like 164 280 - -
Lal17g0029 329 Pfam Plants and Prokaryotes Conserved (PCC) domain 166 278 IPR005175 -
Lal17g0029 329 ProSiteProfiles PPC domain profile profile. 161 299 IPR005175 -
Lal17g0029 329 MobiDBLite consensus disorder prediction 47 79 - -
Lal17g0029 329 CDD DUF296 165 277 IPR005175 -
Lal17g0029 329 MobiDBLite consensus disorder prediction 120 161 - -
Lal17g0029 329 Pfam AT hook motif 140 147 IPR017956 GO:0003677
Lal17g0029 329 Pfam AT hook motif 59 69 IPR017956 GO:0003677
Lal17g0029 329 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10 20 320 - -
Lal17g0029 329 MobiDBLite consensus disorder prediction 292 329 - -
Lal17g0029 329 Gene3D - 166 289 - -
Lal17g0029 329 SMART AT_hook_2 139 151 IPR017956 GO:0003677
Lal17g0029 329 SMART AT_hook_2 59 71 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0029 Lal-Chr17 166560 170603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0029 38 320 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 41.497 2.07e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0029 - - lang:109328100 502.286