Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0025 ATGTCTTCTGACTCTTCTTCTTCAGATTCACCTCCACCTGATTCAAATACCCCACCATCGGATGGTAATTCATCATCACCCCCACCACCATCACCTGATAACTCATCACCCCCACCACCATCACCTGATAACTCATCATCACCCCCACCACCATCACCTGATAACTCATCACCACCACCACCACCCGATGATAACTCATCACCACCACCATCATCTCCTCCACCACCACCTCCGCCCGATAATGGCAATGGCTCATCCCAATCTCCTCCTCCTCCTCCTCCTCCTCCTAACAATAAATCACCAAACCACCAGCCACCACCACCGACCCTAGGAAATGGGCAGTTTTCTCCCCCGCCGCCGCATCATGAATTGTCGGAGCCATCACCTAATTCAGGTAAGTCTAATAATACACCATCATCATCAGGTGGTGGTGGTGGGAGCAGTATCAGCGTGCCAGCTATAATAGGCATTGCAGCTGGAGCTGGATTATTGCTCCTTGTGGCTATACTACTCATCATTGCATGTTCAAGAAGGAAGAAAAAATCTGACTCTCCCGTTCGTTACTTTAATCATACAGCAGATGATAACTATTTTAAACGTCAAATTCCTCCAGCAGCAGGTCCAAATCAGTATGGTTACAACAATAACAGAGAACACGTTCTTAACATACCACCACCACCAGGTGCAGTTTGGGGAGGAACACTAACCCCTCCACCACCACCACCTCAGTTTAATAGTAGTGACATGAGCACCTCAAGTTACTCTAACTCCGGGCCCCATGGTCCTGTTCTTCCACCACCACACCCTTCTGTGGCACTTGGATTCAATCAGAGCAGTTTCACATTTGAAGAGCTTTCTGCTGCTACTGGGGGATTTACACAAAGGAACTTACTTGGTCAAGGTGGGTTTGGATATGTACACAAAGGTTTGCTTCCTAATGGTAAAGAGATTGCAGTGAAGAGCCTTAAATCCACTGGGGGACAAGGAGATAGAGAATTCCAAGCTGAAGTTGATACTATCAGTCGTGTGCATCATCGACATCTTGTCTCACTTGTTGGGTATTGCATTTCAGACACCAAAAAGCTACTGGTGTATGAATTTGTGCCTAACAAAACCCTTGAATATCATCTTCATGGGAAGGGTCGACCTGTAATGGATTGGGGCACCAGGCTCAAAATTGCGATTGGATCAGCCAAAGGACTTGCTTACCTGCATGAGGATTGCCATCCTCGTATCATTCACCGAGACATAAAGGCTGCAAACATTCTAATCGAAAACAACTTCGAAGCCAAAGTATCAGATTTTGGATTGGCAAAGTTTAGTCAAGACACTAACACTCATGTTTCTACTCGCGTGATGGGAACATTTGGGTATATGGCTCCTGAGTATGCATCAAGTGGTAAGCTAACTGATAAATCTGATGTATTCTCGTATGGCATTATGCTTTTGGAGCTAATAACTGGACGGCGCCCAATTGATAACACCGCTGAATACGAGGACCAGAGTTTGGTTGACTGGGCTCGGCCAGTTTGCGTGAAGGCGATTGAAAGTGGAAACTTTGAGGAGCTGGTGGATCCACGTTTAGAGGGAAATTATAACATACAGGAGCTAGCACACATGGTGGCTTGTGCTTCTGCTAGCGTTAGGCACTCAGCAAAGAGGAGACCAAGAATGAGCCAGGTTGTACGAGTACTGGAGGGTGATGTGTCACTAGAGGTGCTTAACCACGAGGGAGTGAAACCTGGGCAAAGTACAATGTACAGCGGTGCAAATAGCGGAGAATATGGTGCTACTGCCTACCTTGCTGATATGAAACAGTTCAGGAAACTAGCATTAGAAAGTGGCACTGCAAACAGTGATTTATATGGTAACACAAGTGAGTATGGCCTCAATCTTTCTGCCTCAACCAGTGACCAATCATCCACTGAATATACCAAGAGAACAGAAATAAGCAAGGACCATGAATGA 1968 0.4619 MSSDSSSSDSPPPDSNTPPSDGNSSSPPPPSPDNSSPPPPSPDNSSSPPPPSPDNSSPPPPPDDNSSPPPSSPPPPPPPDNGNGSSQSPPPPPPPPNNKSPNHQPPPPTLGNGQFSPPPPHHELSEPSPNSGKSNNTPSSSGGGGGSSISVPAIIGIAAGAGLLLLVAILLIIACSRRKKKSDSPVRYFNHTADDNYFKRQIPPAAGPNQYGYNNNREHVLNIPPPPGAVWGGTLTPPPPPPQFNSSDMSTSSYSNSGPHGPVLPPPHPSVALGFNQSSFTFEELSAATGGFTQRNLLGQGGFGYVHKGLLPNGKEIAVKSLKSTGGQGDREFQAEVDTISRVHHRHLVSLVGYCISDTKKLLVYEFVPNKTLEYHLHGKGRPVMDWGTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKAANILIENNFEAKVSDFGLAKFSQDTNTHVSTRVMGTFGYMAPEYASSGKLTDKSDVFSYGIMLLELITGRRPIDNTAEYEDQSLVDWARPVCVKAIESGNFEELVDPRLEGNYNIQELAHMVACASASVRHSAKRRPRMSQVVRVLEGDVSLEVLNHEGVKPGQSTMYSGANSGEYGATAYLADMKQFRKLALESGTANSDLYGNTSEYGLNLSASTSDQSSTEYTKRTEISKDHE 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0025 655 Gene3D Phosphorylase Kinase; domain 1 269 367 - -
Lal17g0025 655 SUPERFAMILY Protein kinase-like (PK-like) 271 565 IPR011009 -
Lal17g0025 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Lal17g0025 655 MobiDBLite consensus disorder prediction 12 125 - -
Lal17g0025 655 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 8 617 - -
Lal17g0025 655 MobiDBLite consensus disorder prediction 1 145 - -
Lal17g0025 655 MobiDBLite consensus disorder prediction 628 655 - -
Lal17g0025 655 MobiDBLite consensus disorder prediction 127 145 - -
Lal17g0025 655 MobiDBLite consensus disorder prediction 628 644 - -
Lal17g0025 655 MobiDBLite consensus disorder prediction 230 245 - -
Lal17g0025 655 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 8 617 - -
Lal17g0025 655 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Lal17g0025 655 Pfam Protein tyrosine and serine/threonine kinase 295 499 IPR001245 GO:0004672|GO:0006468
Lal17g0025 655 MobiDBLite consensus disorder prediction 226 270 - -
Lal17g0025 655 Gene3D Transferase(Phosphotransferase) domain 1 368 577 - -
Lal17g0025 655 ProSiteProfiles Protein kinase domain profile. 292 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0025 655 SMART serkin_6 292 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0025 655 SUPERFAMILY Formin homology 2 domain (FH2 domain) 74 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0025 Lal-Chr17 123883 126678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0025 105 646 Trihelix Transcription Factor Family AT1G70460 48.182 9.98e-157 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lal17g0025 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0025 - - gmx:100806299 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0025 17 123883 126678 Lal17g0025 17 123883 126678 ECH