Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0011 ATGGAGAGTTTGAAGAAATCGTTGAAACCGTATGGCTCTCAGAAAGCAGGAAGGTCGAAGATATCAACAGGGGATGGAAGCCAAGACTCTGTGTTTGAAGAGCTGCCCATACTTCTAGCTGAACAATCTTGTTCTATAGCCATAAAAAGCGACCAAGATGATAAAAACAACAAGAACAAGAACAAGAAGATGATGATAATGATGATGGATAAAAATGATAATAATAAGAATGATAATGATGGGAATATTAGTGGTTCTGATCATGATCCACCATCCCAACTGATACGTAGATTCTTAGACAAACAAAAAATAATGACATCATCAGTATCAAGTGAAATGGGTGTTGACATGATGGACTTAAAAATGGATGGACTCCCACTTCATGATTCATCTATTTCTATTTCTATTTCCAATTCTTCTACTTCTAATGATCCTCCTGCCACTAGTTACAAAACACCAACAGGTACACCTCAATATTCACAAAACCGTCCTCCTCTTCCTCACCATAACAGGGACACCTCCAACCCCAGCTCTGCCTTGCTCCGCAAAACCAAAACCAAAACCAAAAACAGGTCCAAGTCCAGACTGCTTGACCCTGAATTCTCTCACCCTCAACATCAATACTCTAATCTTCTCCCCAAATCATCAGGCCAACTCTTCTATAGCTTTCTTGGCACCAAAAAAAGTGATGACGGCGATGATGATGAAGACGACCCTTTCTTAGAAGAATATCTTCCAGATGAGTACAAGAAGCACACTCATTTCAGCCTATGGGTTCTCCTTCAGTGGTTGAGCCTCATTTGCATCATTGCTGCCCTTATTGCCAACCTTTGCATCCCTTCCTGGAGAGACAAGAACCTATGGGACCTTAGGTTATGGAAATGGGAGGTCATGATTCTAGTCCTAATATGCGGCCGTTTGGTCTCCGATTGGGTCATCCGCATTGTTGTCTTCTGCATTGAGAGGAACTTCGTGTTGCGCAAGAAAGTCTTATATTTTGTCTATGGTGTCAGGAAGGCTGTCCAGAATTGCTTGTGGTTGGGTCTTGTCTTGATTGCTTGGCATTCATTATTTGATAAGAAAATGGATAATGAAACCAAAACTGGCTTCCTCAATTATGTCAATAAGGCATTGGTGTGTTTCTTGCTGGCCACCGTTGTGTGGCTACTCAAAACTCTATTGGTCAAGGTCTTGGCTTCTTCATTTCATATGAGCACCTATTTTGATAGGATTCAAGAGTCATTGTTTAATCAATTCATAATAGAGACACTATCAGGACCACCTACCATAAAGGATGATAAGCTAGTTTCTGAGGTACAAAAGCTGCAGAATGCAGGGGTAGCCATTCCAGCAGGCCTAACGGCCTCTGCATTCCCAAAAATCAAGAGTGAAGTGCCTAAAAGTGCTACGTCAAACAACAAGGTGGCAGCAGATCAAGATAATGGGATAACTATTGATCACCTGCATAAGCTGAATCCAAAAAATGTGCCAGCTTGGAATATGAAAAGGCTAATCAATATGGTCCGGCATGGGGCTCTGTCTACCCTAGATGAGCAAATACCTGATGACTCCACACAAGGGGATGATGAGTCCACCAAGCATATTAAAAGTGAAAATCAGGCTAAAGCAGCAGCCAAGAAAATATTTCACAATGTTGCTAGGCCAGGTTCCAGGTATATATACCTAGAGGATTTAATGCATTTTATGCTAGAAGATGAAGCTATCAAAACCATGAATCTCTTTGAAGGGGCTTCTGAAACCTCTAAAATCAGCAAATCCGCCTTGAAGAACTGGGTGGTTAATGCCTTTAGAGAGAGGAGAGCGCTTTCTTTGACATTGAATGATACCAAAACGGCAGTGATGAATCTCCATCTAATACTCAATGCTGTGGTGGCCATTACTGTAGTGATTATTTGGCTGTTGATATGGGAAATTGTCACAAGCCAAGTTATTATGTTTGTAATGTCACAAACTTTGTTGTCTGCATTTGTATTTGGAAGTACTTGCAGATCGATATTTGAATCAATCATTTTCTTATTTATCATGCACCCATTTGATGTGGGAGACAGGTGTGAAATTGACAACGCCCAGCTAGTTGTAGAAGAAATGAAGATATTGACAACCGTATTTCTAAGAGATGACAATGCAAAGGTCATGATCCCTAATAGTATCCTAGCTATGAAGGCCATCTATAATTTCTATCGGAGTCCTGACATGGGAGATGCTATTGAATTCTTTATACATGTCTCTACCCCGGCTGAAAGCATTGCACTTCTTAAACAAAGAATAGAGAGTTATATTAATAACAAGAAGGACCATTGGCATCCTTCACCTATGATAGTGTTGAAGGACCATGAAAGTTTAAACATGATAAGAGTGGCAATTTGGCTATGTCATAGAATGAACTTCCAAGACATTGGAGAAAGATATGAGAGGAGATCCCTTTTGATTGAAGAGACAATTAAGATATTCAAGGACCTTGACATTCAGTACCGTCTGTTACCTCTTGATATTAACATTAGAAGCATCCCTCTCACTTCTGCTCGCCTTCCACCCAGTTGGACCACAATCACAACTTGA 2580 0.4054 MESLKKSLKPYGSQKAGRSKISTGDGSQDSVFEELPILLAEQSCSIAIKSDQDDKNNKNKNKKMMIMMMDKNDNNKNDNDGNISGSDHDPPSQLIRRFLDKQKIMTSSVSSEMGVDMMDLKMDGLPLHDSSISISISNSSTSNDPPATSYKTPTGTPQYSQNRPPLPHHNRDTSNPSSALLRKTKTKTKNRSKSRLLDPEFSHPQHQYSNLLPKSSGQLFYSFLGTKKSDDGDDDEDDPFLEEYLPDEYKKHTHFSLWVLLQWLSLICIIAALIANLCIPSWRDKNLWDLRLWKWEVMILVLICGRLVSDWVIRIVVFCIERNFVLRKKVLYFVYGVRKAVQNCLWLGLVLIAWHSLFDKKMDNETKTGFLNYVNKALVCFLLATVVWLLKTLLVKVLASSFHMSTYFDRIQESLFNQFIIETLSGPPTIKDDKLVSEVQKLQNAGVAIPAGLTASAFPKIKSEVPKSATSNNKVAADQDNGITIDHLHKLNPKNVPAWNMKRLINMVRHGALSTLDEQIPDDSTQGDDESTKHIKSENQAKAAAKKIFHNVARPGSRYIYLEDLMHFMLEDEAIKTMNLFEGASETSKISKSALKNWVVNAFRERRALSLTLNDTKTAVMNLHLILNAVVAITVVIIWLLIWEIVTSQVIMFVMSQTLLSAFVFGSTCRSIFESIIFLFIMHPFDVGDRCEIDNAQLVVEEMKILTTVFLRDDNAKVMIPNSILAMKAIYNFYRSPDMGDAIEFFIHVSTPAESIALLKQRIESYINNKKDHWHPSPMIVLKDHESLNMIRVAIWLCHRMNFQDIGERYERRSLLIEETIKIFKDLDIQYRLLPLDINIRSIPLTSARLPPSWTTITT 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0011 859 PIRSF Memb_At2g17000 18 858 IPR016688 -
Lal17g0011 859 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 180 857 - -
Lal17g0011 859 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 38 145 - -
Lal17g0011 859 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 8 66 856 - -
Lal17g0011 859 SUPERFAMILY Sm-like ribonucleoproteins 674 733 IPR010920 -
Lal17g0011 859 MobiDBLite consensus disorder prediction 133 183 - -
Lal17g0011 859 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 180 857 IPR016688 -
Lal17g0011 859 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 66 856 IPR016688 -
Lal17g0011 859 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 38 145 IPR016688 -
Lal17g0011 859 MobiDBLite consensus disorder prediction 133 209 - -
Lal17g0011 859 Gene3D - 684 733 IPR023408 -
Lal17g0011 859 MobiDBLite consensus disorder prediction 1 28 - -
Lal17g0011 859 Pfam Mechanosensitive ion channel 627 829 IPR006685 GO:0016020|GO:0055085
Lal17g0011 859 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0011 Lal-Chr17 51342 56114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0011 53 856 Mechanosensitive Ion Channel Family AT1G78610 53.076 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0011 K22048 - gmx:102665658 917.146