Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1871 ATGGGTAATTGCGTATGTAATTCTTCAGCTAGAGTAGATGCAGCTCACACCTCCACAACTATTTCTGTGACAGCAATTTCAAAAAGTGATGCTTCATCATTAAGTGAAATCTTGTATTCTCCAAACCTTAAGCCCTTCACATTCAATGAGTTAAAGAATTCTACCAGCAACGTCCGTCCCGATACTCTTCTTGGTGAAGGAGGATTTGGACATGTCTACAAGGGTTGGATTGATGAACAAACATTTACCGCTTCAAAGCCTGGATCAGGAATGATTGTTGCTGTCAAGAAACTTAAGCCTGAAGGTTACCAAGGTCATAAGGAATGGTTGACTGAAGTCAACTACCTAGGCCAACTCCACCATCCTAATCTGGTTAAATTAATTGGATACTGTGTCGAAGGAGAGCACCGATTATTGGTCTATGAGTTTTTGTCCAAGGGGAGCTTAGAGAATCATCTCTTTAGAAGAGGAGCACAACCACTGTCTTGGTCAGTGAGGATGAAAGTGGCCATTGATGCTGCTAGAGGACTCTCTTTTCTTCATAATGCCAAATCGCAAGTCATATACCGTGATTTTAAAGCTTCTAATATCCTACTTGATGCTGAGTTCAATGCTAAACTCTCTGATTTTGGTTTAGCCAAAGCTGTCCCTACTGGTGATAGAACCCATGTCTCTACACAAGTTCTGGGTACACGTGGATATGCAGCACCTGAATATGTTGCAACAGGTCGGTTGACGGCCAAAAGTGATGTATACAGCTTTGGGATTGTATTGCTTGAACTTTTGTCTGGAAGACGTGCTGTTGATAGAACAAAAGGCGGTATAGAGCAGAATCTGGTAGACTGGGCAATGCCATATTTGGGTGACAAAAGAAGACTGTTTAGGATTATGGACACCAAGTTGGAGGGCCAATACCCACCAAAAGGAGCATTTGTAGCTGCTACTCTTGCTCTAAAATGCCTTAGTATTGAAGCCAAGGCAAGGCCTCCAATGACAGAGGTCTTAGCAACTCTGGAACAGATTGAAGTCCCTAAATCCTCAGGGCGAAACTCCCAATCACAACGTAAGAGAGTCCATGTTCCTACAAAAAAGTCTCCTGCACCTATAAATCTTACTTAG 1119 0.4254 MGNCVCNSSARVDAAHTSTTISVTAISKSDASSLSEILYSPNLKPFTFNELKNSTSNVRPDTLLGEGGFGHVYKGWIDEQTFTASKPGSGMIVAVKKLKPEGYQGHKEWLTEVNYLGQLHHPNLVKLIGYCVEGEHRLLVYEFLSKGSLENHLFRRGAQPLSWSVRMKVAIDAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAVPTGDRTHVSTQVLGTRGYAAPEYVATGRLTAKSDVYSFGIVLLELLSGRRAVDRTKGGIEQNLVDWAMPYLGDKRRLFRIMDTKLEGQYPPKGAFVAATLALKCLSIEAKARPPMTEVLATLEQIEVPKSSGRNSQSQRKRVHVPTKKSPAPINLT 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1871 372 ProSitePatterns Protein kinases ATP-binding region signature. 64 97 IPR017441 GO:0005524
Lal16g1871 372 MobiDBLite consensus disorder prediction 344 372 - -
Lal16g1871 372 ProSiteProfiles Protein kinase domain profile. 58 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1871 372 PANTHER OS01G0588500 PROTEIN-RELATED 34 352 - -
Lal16g1871 372 Pfam Protein tyrosine and serine/threonine kinase 62 337 IPR001245 GO:0004672|GO:0006468
Lal16g1871 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Lal16g1871 372 PANTHER BNAA06G34000D PROTEIN 34 352 - -
Lal16g1871 372 SUPERFAMILY Protein kinase-like (PK-like) 31 338 IPR011009 -
Lal16g1871 372 CDD STKc_IRAK 64 341 - -
Lal16g1871 372 Gene3D Transferase(Phosphotransferase) domain 1 144 365 - -
Lal16g1871 372 Gene3D Phosphorylase Kinase; domain 1 28 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1871 Lal-Chr16 17915314 17917915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1871 46 338 Glycoside Hydrolase AT3G07070 53.378 2.18e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal16g1871 PK_Tyr_Ser-Thr 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1871 - - gmx:100809778 612.068