Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1868 ATGTTGTTGAAGTTGGCATTACCACCACCACCAACCACACCACTGCTCTGTTTCTCTCCAAAGTTCATTCCTTTTTCTCATTCCTTTATCACTTTTAATAACTCACTCAAATGCCGCCACTCTCAACCCATGGCACAGGCTGCAACCCAAACTCCTCATTCAGTTGAAGCCTTGCCACCCAGGGTTTATGTTAATCACTCCATTTACAAAGGGAAAGCTGCACTTACACTCACTCCTAGACAGCCAGAATTTGCGCCACTTGAATCAGGAGCCTTCAAAGTATCTAAGGAAGGTCATGTGCTGCTTCAGTTTGCACCTGCTGTTGGTATGCGCCAATATGATTGGGAAAGAAAGCAGATATTCTCGTTGTCAGTGGGTGAAATGGGAACTATAATTAGCCTTGGTGCGAGGGATTCTTGTGAATTTTTTCATGATCCTTCAAAAGGCAAAAGTGACGAAGGTAAAGTCAGAAAAGTTTTGAAGGTGGAGCCTCTTCCAGATGGTTCTGGCCACTCCTTTAAGCTCAGTGTTCAAAACAAGCTTCTGAATGTGGATGAAAACATCTATATCCCTGTTACAAAAGCAGAGATAGCTGTTTTGAGCTCAATTTTCAATTTTATCATACCATATATGATAGGTTGGCATACCTTTGCAAACTCCATAAAACCAGATGATTCCAATGGAGTGAATAATAATAGCAACCCAAGATATGGAGGAGACTATGAATGGAACAGATAG 738 0.4173 MLLKLALPPPPTTPLLCFSPKFIPFSHSFITFNNSLKCRHSQPMAQAATQTPHSVEALPPRVYVNHSIYKGKAALTLTPRQPEFAPLESGAFKVSKEGHVLLQFAPAVGMRQYDWERKQIFSLSVGEMGTIISLGARDSCEFFHDPSKGKSDEGKVRKVLKVEPLPDGSGHSFKLSVQNKLLNVDENIYIPVTKAEIAVLSSIFNFIIPYMIGWHTFANSIKPDDSNGVNNNSNPRYGGDYEWNR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1868 245 MobiDBLite consensus disorder prediction 223 239 - -
Lal16g1868 245 Gene3D Transcriptional Coactivator Pc4; Chain A 54 232 IPR009044 GO:0003677|GO:0006355
Lal16g1868 245 MobiDBLite consensus disorder prediction 223 245 - -
Lal16g1868 245 SUPERFAMILY ssDNA-binding transcriptional regulator domain 60 245 IPR009044 GO:0003677|GO:0006355
Lal16g1868 245 Pfam Whirly transcription factor 68 202 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lal16g1868 245 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 41 245 - -
Lal16g1868 245 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 41 245 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1868 Lal-Chr16 17876894 17879735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1868 48 245 Whirly Transcription Factor Family AT1G14410 72.222 2.69e-108 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lal16g1868 Whirly 1.4e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1868 - - gmx:100789252 341.273