Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1867 ATGATGTTTTCTTCACAGTTTGATTACAACTCTTCGGAGGAACTCTTCGGGCTGGAGGTGGAACTCAAACCCAGCAAAGGTAACTCTGGTACAGGAGAACCGAGGTCATGGTTTGGTAGGAATGGACAGTATATGAGAGAGCTACCTTGTCCAAGTTGTAGGGGAAGGGGTTATACTCCTTGTACAGAGTGTGGAATAGAAAGATCAAGGTCAGACTGTCCCAAATGTAATGGAAAGGGTATAGTGAGTTGCCACAAATGCTCAGGAGATTGTGTTATATGGGAAGAATCAATTGATGAACAACCTTGGGAGAGAGCTCGTTCTGTTTCCCCACTTAAAGTGAAGGAAGACGAGGAAGTTGACAGTTTAGACATAAAGTTAGACGTGAAGAAAAAGTCCAAGCGTGTTTACCAATCACCAACTCCTGAAGTCGGATTAAAGATTAGTCGTTCATTAAAAAGTCTCAATGCAAAAACTGGTCTATTTAGCAACCATATGAAGATTATCCACCAGGATCCCATGCTTCAGGCACAGAGAGTTGCTGCCATTAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAAACATACTTCCAAAACTATGAAAGCTTTCTTCAGTGATCCAATAAACCGTATGAAAAGGAGCATCGCTATGAAGGGAGTGAAATTCTACTGCCAACATTGTGGACGCGAAGGGCATAGGAGACATTACTGTCCAGAAATCAAAGATAGTTTGATCAGTTGGCAATACTCATGTCGGCTATGTGGGGAAAAAGGCCACAACAGAAGAACATGTATAAAGTTAAGGATAAGCCATACCGATGGGAGAGTTAAAAAACACTACCGGTGTAAAATATGTCATTGTTATGGTCATAACCGTAGGGCGTGCCCTCAAGTTGTTTCTAATAAAAGAAGGGACCTGGCTTCTCAAAAAGTATATAAGTGTGGGTTGTGCCACAAAGAAGGACACAATAGTAGGACATGTCCTAGTAGGACAATTGTTGCTGAGCATTCACAAGAGGAACAATCAATGTCCTAG 1035 0.4203 MMFSSQFDYNSSEELFGLEVELKPSKGNSGTGEPRSWFGRNGQYMRELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGIVSCHKCSGDCVIWEESIDEQPWERARSVSPLKVKEDEEVDSLDIKLDVKKKSKRVYQSPTPEVGLKISRSLKSLNAKTGLFSNHMKIIHQDPMLQAQRVAAIKKAKGTVAARKHTSKTMKAFFSDPINRMKRSIAMKGVKFYCQHCGREGHRRHYCPEIKDSLISWQYSCRLCGEKGHNRRTCIKLRISHTDGRVKKHYRCKICHCYGHNRRACPQVVSNKRRDLASQKVYKCGLCHKEGHNSRTCPSRTIVAEHSQEEQSMS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1867 344 ProSiteProfiles Zinc finger CCHC-type profile. 224 239 IPR001878 GO:0003676|GO:0008270
Lal16g1867 344 SUPERFAMILY Retrovirus zinc finger-like domains 221 266 IPR036875 GO:0003676|GO:0008270
Lal16g1867 344 Gene3D - 273 343 - -
Lal16g1867 344 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 14 332 - -
Lal16g1867 344 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 14 332 - -
Lal16g1867 344 SMART c2hcfinal6 281 297 IPR001878 GO:0003676|GO:0008270
Lal16g1867 344 SMART c2hcfinal6 313 329 IPR001878 GO:0003676|GO:0008270
Lal16g1867 344 SMART c2hcfinal6 250 266 IPR001878 GO:0003676|GO:0008270
Lal16g1867 344 SMART c2hcfinal6 223 239 IPR001878 GO:0003676|GO:0008270
Lal16g1867 344 Gene3D - 214 267 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1867 6 344 C2H2 Transcription Factor Family AT5G20220 61.671 4.26e-150 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1867 - - gmx:100800156 564.303