Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1858 ATGAACGGTTGGGATGGAATTCAATCTCAAGCTTCATCTTTCGCTTCTCGATCCACTTCTACTCAACCTGTTCGACTCGGTCGAGTTCAACCTCAACCTCCAACTCACCGCACCATTTTCTCCAATCATCGTCAAGCCAATCTCCACCTCCGCTTCAAGGGGAATTCAATATCAACTACAAAGTTCAACTTTTTCACTTTTTTGCCAAAAGGATTGTTCGAACAGTTCAGACGGGTGGCCAATCTCTACTTTCTTACAATCTCAATATTGTCAACCACACCAATTAGTCCTGTGTCTCCAATAACTAATGTGCTCCCACTATCTCTTGTGCTTCTTGTCTCTCTTATCAAGGAAGCTTTTGAGGACTGGAAGCGTTTTCAAAATGACATGGCCATAAACAATAATACGATAGATGTTTTGCAAGACCAAAAGTGGGAGCCTATACCATGGAAAAAGTTGCAGGTTGGAGACATAATCAAGGTTAAGCAGGATGGATTCTTTCCTGCAGATCTGCTTTTCTTGGCTAGTACAAATGCAGATGGTGTCTGCTACATTGAGACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAGACTTGGGATTACCTGACACCAGAGAAGGCATCCGAATTCAAAGGTGAAATTGAATGTGAACAGCCAAACAACTCATTGTATACCTTCACTGGAAATCTTATACTTGAAAAGCAAACACTACCTCTCAGTCCAAACCAAATTTTGTTACGAGGCTGCAGTCTCAGGAATACAGAGTATGTTGTTGGGGTTGTTATTTTCACTGGACATGAAACTAAGGTGATGATGAATACAATGAATGTCCCTTCCAAACGAAGTACATTGGAGAGGAAGCTTGACAAGCTCATACTCACTCTGTTTGCTACTCTCTTTATGATGTGTTTTATTGGAGCCATAGGAAGAGCACACTGTTACGTGGGGGCTGGGATTGGTTTGTTTGAACTTTGCATTAGTGCTATCTTCGTGAACAAAAAGTATTTCTACTTACACCTTGATTCATCAGAGGAAGGCTCAGCGCAGTTCAACCCAAGAAATAGATTTTTTGTTTTTATTCTGACTATGTTTACCCTTATCACACTGTACTCGACAATCATCCCCATTTCACTATATGTGTCTATAGAGATGATTAAATTTATTCAGTCAACTCAGTTTATCAACAAGGACTTGTCCATGTACCATAGTGAAACCAATACACCTGCATTGGCCAGAACATCAAATTTGAATGAAGAACTTGGGCAGGTGGAATACATTTTCTCTGACAAAACTGGGACTCTAACAAGAAACTTAATGGAGTTCTTCAAGTGTTCCATTGGAGGAGAGATCTATGGTAATGGTGTGACTGAAACTGAGAGGGGAATAGCAGAGCGCAATGGCATAAAAATTGAGGAAAATAAATCACCCAATGTAGTGCAAGAAAAGGGTTTTAATTTTGATGATGCTAGGCTTATGAGAGGAGCTTGGAGGAATGAACCTAATCCTGATTTCTGCAAGGAATTTTTCAGATGCCTTGCTATATGCCATACTGTACTTCCTGAGGGTGAGGAGTCTGCTGAAAAGATCAGATATCAAGCTGCATCACCTGATGAGTCTGCATTGGTTATTGCTGCGAAGCACTTTGGTTTCTTCTTTTACAGACGAACACCTACGATGATATATGTTCGTGAATCTCATGTTGAGAAGATGGGCAATATTCAAGATGTGCCTTATGAGATTCTAAATGTGCTTGAATTTAATAGCACAAGGAAGCGTCAGTCTGTAATATGTCGTTATCCAGATGGGAGACTTATACTATACTGTAAGGGTGCTGATAATGTAATCTATGAGAGACTGGCTGATGGCAATAATGATATCAAAAAAGTGACTAGGCAACATTTAGAACAATTTGGGTCTGCTGGACTACGCACATTATGTCTGGCTTACAAAGAAGTGCATCCTGGTGTTTATGAAAGCTGGAATGAGAAGTTTATTCAGGCCAAGTCTTCTCTACGGGATCGGGAAAAGAAGTTAGACGAGGTGGCAGAACTTATTGAAAATGATCTCATTTTAATTGGTAGCACTGCCATAGAAGACAAGCTTCAAGAGGGAGTACCAGCTTGCATAGAGACTCTTCAGAGAGCTGGTATTAAAATTTGGGTTCTTACTGGTGATAAGATTGAAACAGCAATAAACATAGCTTATGCATGCAGTTTAATAAACAATGAGATGAGGCAATTTATTATCAGTTCAGAAACTGATGCAATTAGAGAGTTGGAGGAGAAAGGTGACCAAGTAGAAACCGCACGATTTATTAAAGAAGAAGTTAAGAATCAGTTGAAGAAGTGCCTTGAGGAAGCACAAAGCTATCTTCAGTCCTTATCTGGACCTAAATTAGCACTTGTCATTGATGGAAAATGTCTAATGTATGCATTGGATCCAAGTTTAAGAGTGATGTTGTTGAATTTAAGTTTGAATTGTCATGCAGTTGTTTGCTGCCGAGTTTCTCCTTTACAGAAAGCACAGGTTACAAGTATGGTCAAGAAAGGTGCGCATAAAATAACATTAAGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGCATAAGTGGGATGGAGGGGATGCAAGCTGTGATGGCTAGTGATTTTTCAATTGCACAGTTCCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGGTGGTCATACCTTCGAATATGCAAGGTCGTCATATACTTCTTTTACAAGAATCTTACATTTACTCTTACTCAGTTTTGGTTTACTTTTCAAACTGGATTTTCTGGTCAGCGATTCTATGACGATTGGTTTCAGTCACTATATAATGTCATCTTCACTGCACTCCCTGTGATCATAGTTGGACTGTTTGACAAGGATGTCAGTGCATCTCTATCCAAGAAGTATCCTCAACTGTACATGGAGGGAATAAGAAATGTCTTCTTCAAATGGAGAGTTGTGGCTATATGGGCCTTCTTTTCTGTATACCAGTCTCTAGTATTCTTCTATTTTGTCAGCACGACAAATTTAAGTGCTAAAAACTCTGATGGAAAGGTATTTGGACTCTGGGATGTCAGCACAATGGCCTTCACATGTGTCGTAGTAACGGTCAACTTGCGACTACTTTTGATTTGCAATTCAATCACAAGATGGCACTATGTTAGTGTTGGTGGAAGTATATTAGCCTGGTTTCTTTTTATTTTTATATATTCAGGGATTTCCACTCCTTATGATCGACAGGAGAATATTTATTTTGTCATATATGTCTTGATGAGTACGTTCTATTTCTACATCACACTACTTCTTGTTCCCGTTGCTGCACTTTTCTGCGACTTTGTTTACCAGGGGATTCAAAGATGGTTCTTCCCTTATGATTATCAAATTATTCAAGAAATGCATAAACATGAGGTTGATAGCTTTGAAAAGGCACAATTGATGGAGATCGGGGACCAGCTTTCGCCAGCAGAGGCAAGGAGTTATGCCATATCGAAACTGCCACGTGAGATATCAAAGCACACTGGATTTGCTTTTGACTCACCTGGGTATGAGTCATTTTTCGCAGCACAGCTTGGCATGTATAAACCACCAAAGGCATGGGATGTTGCTAGACGTGCTAGCGTGAAATCACGGAAGAAGATCGGGCATCAAAATAAGTAG 3717 0.3992 MNGWDGIQSQASSFASRSTSTQPVRLGRVQPQPPTHRTIFSNHRQANLHLRFKGNSISTTKFNFFTFLPKGLFEQFRRVANLYFLTISILSTTPISPVSPITNVLPLSLVLLVSLIKEAFEDWKRFQNDMAINNNTIDVLQDQKWEPIPWKKLQVGDIIKVKQDGFFPADLLFLASTNADGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEIECEQPNNSLYTFTGNLILEKQTLPLSPNQILLRGCSLRNTEYVVGVVIFTGHETKVMMNTMNVPSKRSTLERKLDKLILTLFATLFMMCFIGAIGRAHCYVGAGIGLFELCISAIFVNKKYFYLHLDSSEEGSAQFNPRNRFFVFILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLSMYHSETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGNGVTETERGIAERNGIKIEENKSPNVVQEKGFNFDDARLMRGAWRNEPNPDFCKEFFRCLAICHTVLPEGEESAEKIRYQAASPDESALVIAAKHFGFFFYRRTPTMIYVRESHVEKMGNIQDVPYEILNVLEFNSTRKRQSVICRYPDGRLILYCKGADNVIYERLADGNNDIKKVTRQHLEQFGSAGLRTLCLAYKEVHPGVYESWNEKFIQAKSSLRDREKKLDEVAELIENDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACSLINNEMRQFIISSETDAIRELEEKGDQVETARFIKEEVKNQLKKCLEEAQSYLQSLSGPKLALVIDGKCLMYALDPSLRVMLLNLSLNCHAVVCCRVSPLQKAQVTSMVKKGAHKITLSIGDGANDVSMIQAAHVGVGISGMEGMQAVMASDFSIAQFRYLADLLLVHGRWSYLRICKVVIYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPQLYMEGIRNVFFKWRVVAIWAFFSVYQSLVFFYFVSTTNLSAKNSDGKVFGLWDVSTMAFTCVVVTVNLRLLLICNSITRWHYVSVGGSILAWFLFIFIYSGISTPYDRQENIYFVIYVLMSTFYFYITLLLVPVAALFCDFVYQGIQRWFFPYDYQIIQEMHKHEVDSFEKAQLMEIGDQLSPAEARSYAISKLPREISKHTGFAFDSPGYESFFAAQLGMYKPPKAWDVARRASVKSRKKIGHQNK 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1858 1238 Gene3D - 698 905 IPR023214 -
Lal16g1858 1238 Pfam Phospholipid-translocating ATPase N-terminal 41 103 IPR032631 -
Lal16g1858 1238 SFLD Haloacid Dehalogenase 416 916 - -
Lal16g1858 1238 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 838 944 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal16g1858 1238 PRINTS P-type cation-transporting ATPase superfamily signature 434 448 - -
Lal16g1858 1238 PRINTS P-type cation-transporting ATPase superfamily signature 865 884 - -
Lal16g1858 1238 Coils Coil 780 800 - -
Lal16g1858 1238 MobiDBLite consensus disorder prediction 1 33 - -
Lal16g1858 1238 SUPERFAMILY Calcium ATPase, transduction domain A 134 278 IPR008250 -
Lal16g1858 1238 SUPERFAMILY Calcium ATPase, transmembrane domain M 44 1143 IPR023298 -
Lal16g1858 1238 Pfam Cation transport ATPase (P-type) 530 625 - -
Lal16g1858 1238 Pfam Phospholipid-translocating P-type ATPase C-terminal 893 1143 IPR032630 -
Lal16g1858 1238 Gene3D - 566 697 IPR023299 GO:0000166
Lal16g1858 1238 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 441 703 IPR023299 GO:0000166
Lal16g1858 1238 CDD P-type_ATPase_APLT_Dnf-like 54 1025 - -
Lal16g1858 1238 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 52 1151 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Lal16g1858 1238 SUPERFAMILY HAD-like 422 907 IPR036412 -
Lal16g1858 1238 Gene3D - 117 282 - -
Lal16g1858 1238 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 12 1232 - -
Lal16g1858 1238 ProSitePatterns E1-E2 ATPases phosphorylation site. 436 442 IPR018303 -
Lal16g1858 1238 SFLD p-type atpase 416 916 IPR044492 -
Lal16g1858 1238 Pfam E1-E2 ATPase 133 312 - -
Lal16g1858 1238 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 12 1232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1858 Lal-Chr16 17735111 17752769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1858 6 1233 Primary Pumps ATPases AT1G59820 76.566 0.0 2014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1858 K14802 - gmx:100815547 2232.22