Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1857 ATGGATGGTGAAGGAAGCAAAAGAGTAACTACAAAGGATGCTTTATTATATATTAAAGAAATAAAGACTGTATTTACAGAAGACATGGAAAAGTATGAACACTTTCTGAAAATATTGAGAGACTTCAAAGAACACAGAATTGGTAGAAATGATGTTATAGCAGCTACCAGTGATTTATTCAAAGGACATAATCATCTACTGTTGGGGTTAAACAACTTCCTTCCAAGGGGTTATGAAATCCAACTTCCATCAGTAAATGAAGAATCATCTGAGCCAGTTTTTGAAATTGAAGTTCCAACAGATTTCAAGAACAAAGTTAAGGCTCGCTTTGAAGAAAATTCTGATAAATATGAGTCATTCCTAGACAAAATAAAACAATTAGAAGCCGGGAAAAAGTCTACAACCGAAACTCTTGAAGAGATTGCTGCAGTGTTGGAGGGCCATGAAGATCTCTTTCAGGAGTTAATTCAATTTATTCCTGGTGCTTCAGGATCAGCCTCTACCTAG 507 0.355 MDGEGSKRVTTKDALLYIKEIKTVFTEDMEKYEHFLKILRDFKEHRIGRNDVIAATSDLFKGHNHLLLGLNNFLPRGYEIQLPSVNEESSEPVFEIEVPTDFKNKVKARFEENSDKYESFLDKIKQLEAGKKSTTETLEEIAAVLEGHEDLFQELIQFIPGASGSAST 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1857 168 Gene3D Paired amphipathic helix 100 160 IPR036600 GO:0006355
Lal16g1857 168 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Lal16g1857 168 PANTHER SIN3B-RELATED 6 161 IPR039774 GO:0003714
Lal16g1857 168 Pfam Paired amphipathic helix repeat 115 158 IPR003822 GO:0006355
Lal16g1857 168 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Lal16g1857 168 ProSiteProfiles PAH domain profile. 7 77 IPR003822 GO:0006355
Lal16g1857 168 SUPERFAMILY PAH2 domain 99 160 IPR036600 GO:0006355
Lal16g1857 168 SUPERFAMILY PAH2 domain 7 78 IPR036600 GO:0006355
Lal16g1857 168 ProSiteProfiles PAH domain profile. 90 162 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1857 Lal-Chr16 17711552 17712566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1857 1 111 WRKY Transcription Factor Family AT4G12020 43.363 1.37e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal16g1857 PAH 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1857 K11644 - lang:109341642 217.238