Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1856 ATGGATAGCGAAGGAAGCAGAAGATTAAATACAAATGATGCTTTCTTATATCTTAAAGAAATAAAGACTGTATTTATAGAAGAGAGAGAAAAGTATGAACACTTTTTGAAAATAATGAGAGACTACAAAGATAACAGAATTACTACAAATGATGTTGTATCAGCTGCCGAGGATTTATTCAAAGGACATAATCATCTACTGTTGGGATTAAACAAATTCCTCCCAAGGGGTTATGAAATCAAACTTCCGCTAATAAAAGAAGAATCATCTGAGCCAGTTCTTGGAATTGAAATCCAACTTCGGCTAATAAAAGAAGAATCATCTAACCCAATTGTTGGAATTGAAATTCAACTTCCGCGAATAAAAGAAGAATCATCTGACTCAATTGTTGGAATTGAAATCAAACTTCCGCTAATAAAACAAGAATCATCTGAACCAGTTGTTGGAATTGAAATCAAACTTCCGCAAATAAAAAAAGAATCATTTGACCCAGTTGTTGGAATTGAAATCAAACTTCCGCTAATAAAAGAAGAATAA 537 0.3222 MDSEGSRRLNTNDAFLYLKEIKTVFIEEREKYEHFLKIMRDYKDNRITTNDVVSAAEDLFKGHNHLLLGLNKFLPRGYEIKLPLIKEESSEPVLGIEIQLRLIKEESSNPIVGIEIQLPRIKEESSDSIVGIEIKLPLIKQESSEPVVGIEIKLPQIKKESFDPVVGIEIKLPLIKEE 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1856 178 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Lal16g1856 178 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Lal16g1856 178 ProSiteProfiles PAH domain profile. 7 77 IPR003822 GO:0006355
Lal16g1856 178 SUPERFAMILY PAH2 domain 7 76 IPR036600 GO:0006355
Lal16g1856 178 PANTHER SIN3B-RELATED 6 85 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1856 Lal-Chr16 17708095 17708722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1856 9 82 WRKY Transcription Factor Family AT4G12020 43.243 3.12e-14 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal16g1856 PAH 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1856 K11644 - lang:109341642 121.709