Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1855 ATGGATAGCGAAGGAAGCAGAAGATTAACTACAAATGATGCTTTATTATATCTTAAAGAAATAAAGACCGTATTTACTGAACACATGGAAAAGTATGAATACTTTTTGAAAATATTGATAGACTTCAAAGAAAACAGAATTGGTAGAAATGATGTTATAGAAGCTGCCAAGGATTTATTCAAAGGACATGATCATCTACTGTTGGGGTTAAACAACTTTCTTCCGAGGGGTTATGAAATCCAACTTCCGTTAGTAAATGAAGAATCATCTGAGCCAGTTCTTGGAATTCAAGATCCAACCGATTTCAAGAATAAGTTTAAGGCTCGCTTTGAAGAAAATTCTCATGTATATGAGTCTTTTCTAGATATTATCAAAAAATTGGAAGCCGGGGAAAAATCTACAACCGAGGCTCAAGAAGAGATTGCTGCACTATTGGAGGGCCATGAAGATCTCCTTCATGAGTTAGTTCACTTTCTTCCTGGTGCTTCAGGATCAGCCTCTACCTAA 507 0.3609 MDSEGSRRLTTNDALLYLKEIKTVFTEHMEKYEYFLKILIDFKENRIGRNDVIEAAKDLFKGHDHLLLGLNNFLPRGYEIQLPLVNEESSEPVLGIQDPTDFKNKFKARFEENSHVYESFLDIIKKLEAGEKSTTEAQEEIAALLEGHEDLLHELVHFLPGASGSAST 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1855 168 Pfam Paired amphipathic helix repeat 115 159 IPR003822 GO:0006355
Lal16g1855 168 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Lal16g1855 168 PANTHER SIN3B-RELATED 5 162 IPR039774 GO:0003714
Lal16g1855 168 SUPERFAMILY PAH2 domain 8 78 IPR036600 GO:0006355
Lal16g1855 168 SUPERFAMILY PAH2 domain 95 160 IPR036600 GO:0006355
Lal16g1855 168 ProSiteProfiles PAH domain profile. 7 77 IPR003822 GO:0006355
Lal16g1855 168 ProSiteProfiles PAH domain profile. 92 162 IPR003822 GO:0006355
Lal16g1855 168 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Lal16g1855 168 Gene3D Paired amphipathic helix 98 160 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1855 Lal-Chr16 17703099 17704179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1855 9 111 WRKY Transcription Factor Family AT4G12020 42.308 3.65e-15 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal16g1855 PAH 3.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1855 K11644 - lang:109341642 237.269