LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal16g1850	ATGATGCTTCTTCAATCTTCATGGCTTCTTTTGTGTCTTGTTTTTGTTTTAAACAGTTTTTTAACAATACCACTCTGCCATTGCCAAATCAATTTTCCTCAGAACATTGAAACTTTCTATCCAAATGAACCACAAGCACCAGAGCAGGCACCAGGACCCATATCAGCATCAAAAACTAGTTCATCGAAGGCTAAGATAGCGATCGCAGTAGCTACAAGTGCAGCAAGTGCAGTAGTTGTTGGTGTTATACTTTTCATTTTGTATCAAAGGTGCTTAAAGAAAAGAAGGAAGAATAGTAACCTTATTGTGGTTGAAGGAAATTTGTTTGAGAGAATAAATGGAAATGTGAAGGGAGTGATTGTTGATGAGGATGGTTTGGATGTGATATATTGGAGAAAACTTGAAGGGAAAAATTCTATAAGCGATCTTCAAAAAGAGGTTTTTCATAGTCCTAAAAACAAAGAAAAAGTGGATGAAGAAAATGATGAAGAAGAAAATCAAGTGAAGAAATTCAAGTCCATTCAACAAGTTCCTCTGCATAGAGGGAAATCTTCAACTTCTCACACAAGAATTCCTCATAATGCTTCCACTTTTCTTGCATCAGTTGAAGCTGTTATCAAACAAGACTCTCCAATTCAACCATTCAATGCAACCCTTCAATCTTCACCATCAACAGCATCAACTCTTCCACCAATAACAGCTACAAAGAATCCATCTCCACCACCTCTTCCACCAAAGGAAGGTGGTTGTTTGAATTCATCATCAAAACCACTACCTAAGCTAGTTAAACAAAGAAACTCTTCAGGGAAAGGTAACATGCCAGAGACCAGCAATGATCAAGTCAAACTCAAGCCTTTGCATTGGGATAAGGTGAATACTAATAATGCTGATCATTCCATGGTTTGGGACAAAGTTGATGGTGGTTCTTTCAGAGGACGAGCCTCGGCACAATACCAGTGTCACGAGTTGAAGTCTCGGGATAAGTTTCTTTGTTTAGGTGTTGATCAAGATCTTATGGAAGCTCTCTTCGGTTATGTCGCTACCAATCGAAAATCCCCCAAAGGAAAGAATGACTCGACGATTCCAAGTAAGGCTGGCGTAGCAACACCGACACGAATTTTCCTTCTTGATCCCAGAAAATCACAGAACATTGCTATTGTTTTGAAATCTCTTGGAGCAACACAAGATGAAATTCTTGAAGCACTTATTGATGGTAGAGGCCTTAATGCAGATACAATTGAAATGCTTGCTAGAGTTTTTTCTCCAACACAAGAAGAACAATCTCTTATCCTTGAATACAAAGGAGACCCAACAAGACTTGCTACAGCTGAATCTTTCTTATATCATATCCTCAAAGCTCTTCCTTCGGCATTTAAGCGTGTGAATGCCATGCTATTTAGGTTGAACTATGACTCCGAGATTCTCGATATCAGAGAATCTTTGCAGACCCTTGAATTGGGATGTAAGGAGCTTAAAAGCCAGAGACTCTTTGTGAGGCTTCTTGAAGCAGTGCTTAAGACAGGAAATCGTATAAACGCGGGTACTGCAAGAGGTAATGCTCATGCTTTCAACTTGGATTCTCTAAGGAAACTCTCTGATGTGAAGAGCACTAATGGAGAAACCACATTACTTAACTTTGTGGTCGAAGGCGTAATCCGTTTGGAAGGAAAACACATCGCTTTTAACCGCAGCCTTAGCCGAAGCAGCAGTAGAAACAACAACAGCAATGTCAATGCAAGCTCTAAGAACAATGCTGCTCCTTCAAATGAAGATAAAGAAAGGGAATATACAATGCTAGGATTACCAATTGTTGGAGGGATCAGTTCTGAGTTCTGTAACCTTAAGAAAGCAGCACTTATTGATTATGATAGTTTAGTTGGTTCAATCTCAGCCTTATCGACCCGGATAATCGAAATTCAAAAACTTGTTTCCCAATGTGGAAATGAAGGAGGGAATTTTGTGAAAGAATTCAACCATTTACTTCGAGGCGCTACCGAAGAATTGAAATTAGTAAGAGATGAGCAAACAAGGGTAATGCAGCTTATCAAGAGAACAGCAGAATACTATCAAGGTGGAGCTTCACAACAGAATTTTCAATTATTTGTCATAGTCAAGGATTTTCTAGGAATGGTTGATCAAGCCTGCATTGAAATCGCGCGTAACTTGCAGAAGAAGAAAACACACAAGGCAAGTTCTGGTTAG	2202	0.3928	MMLLQSSWLLLCLVFVLNSFLTIPLCHCQINFPQNIETFYPNEPQAPEQAPGPISASKTSSSKAKIAIAVATSAASAVVVGVILFILYQRCLKKRRKNSNLIVVEGNLFERINGNVKGVIVDEDGLDVIYWRKLEGKNSISDLQKEVFHSPKNKEKVDEENDEEENQVKKFKSIQQVPLHRGKSSTSHTRIPHNASTFLASVEAVIKQDSPIQPFNATLQSSPSTASTLPPITATKNPSPPPLPPKEGGCLNSSSKPLPKLVKQRNSSGKGNMPETSNDQVKLKPLHWDKVNTNNADHSMVWDKVDGGSFRGRASAQYQCHELKSRDKFLCLGVDQDLMEALFGYVATNRKSPKGKNDSTIPSKAGVATPTRIFLLDPRKSQNIAIVLKSLGATQDEILEALIDGRGLNADTIEMLARVFSPTQEEQSLILEYKGDPTRLATAESFLYHILKALPSAFKRVNAMLFRLNYDSEILDIRESLQTLELGCKELKSQRLFVRLLEAVLKTGNRINAGTARGNAHAFNLDSLRKLSDVKSTNGETTLLNFVVEGVIRLEGKHIAFNRSLSRSSSRNNNSNVNASSKNNAAPSNEDKEREYTMLGLPIVGGISSEFCNLKKAALIDYDSLVGSISALSTRIIEIQKLVSQCGNEGGNFVKEFNHLLRGATEELKLVRDEQTRVMQLIKRTAEYYQGGASQQNFQLFVIVKDFLGMVDQACIEIARNLQKKKTHKASSG	733

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal16g1850	733	MobiDBLite	consensus disorder prediction	214	280	-	-
	Lal16g1850	733	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	273	733	IPR015425	-
	Lal16g1850	733	PANTHER	FORMIN-LIKE PROTEIN	2	311	-	-
	Lal16g1850	733	PANTHER	FORMIN-LIKE PROTEIN	333	730	-	-
	Lal16g1850	733	PANTHER	FORMIN-RELATED	333	730	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Lal16g1850	733	PANTHER	FORMIN-RELATED	2	311	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Lal16g1850	733	Coils	Coil	154	174	-	-
	Lal16g1850	733	MobiDBLite	consensus disorder prediction	214	233	-	-
	Lal16g1850	733	Gene3D	Formin, FH2 domain	282	732	IPR042201	-
	Lal16g1850	733	SMART	it6_source	270	726	IPR015425	-
	Lal16g1850	733	Pfam	Formin Homology 2 Domain	277	711	IPR015425	-
	Lal16g1850	733	MobiDBLite	consensus disorder prediction	565	591	-	-
	Lal16g1850	733	MobiDBLite	consensus disorder prediction	565	586	-	-
	Lal16g1850	733	MobiDBLite	consensus disorder prediction	257	279	-	-
	Lal16g1850	733	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	238	728	-	-
	Lal16g1850	733	Coils	Coil	654	674	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal16g1850	Lal-Chr16	17655865	17658862	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal16g1850	3	726	FH2 protein (formin) Gene Family	AT1G70140	44.256	1.11e-179	530

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal16g1850	-		-	gmx:100783219	764.992

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal16g1850	16	17655865	17658862	Lal23g0224	23	2086580	2089787	LSH
	Lal16g0181	16	1086490	1090101	Lal16g1850	16	17655865	17658862	PCT
	Lal23g0224	23	2086580	2089787	Lal16g1850	16	17655865	17658862	PCT
	Lal16g1850	16	17655865	17658862	Lal16g0181	16	1086490	1090101	PCT
	Lal16g1850	16	17655865	17658862	Lal23g0224	23	2086580	2089787	PCT