Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1844 ATGTCAACGGGAACAACCAAGTCCCAACAATGGCAGTGGGAGAACGCCGTCGCTGGCTCCGCCGCAGGCTTCGCCACCGTCGCAGTTATGCATCCCCTCGACGTTGTCCGAACTAGGTTCCAAGTTAATGATGGTCGAGTCTCTCATCTCCCGAGTTATAGGAACACTGCTCACGCCGTTTTCACTATTGCTCGCTCCGAGGGCTTACGAGGTTTATATGCAGGTTTTCTTCCTGGGGTTCTTGGGTCTACTATTTCGTGGGGTTTATATTTCTTCTTCTATGACAAAGCCAAACAAAGATATGCCCTGAACAGGGAGGAGAAATTGAGCCCAGGTCTTCATCTCGTCTCTGCTGCTGAAGCTGGAGGGCCTGCTGGCATGTTGTCGTTTGTTGTTTACTTGGAGTCTAGGTATTTGATTGCACGTGATAGTGGTGGTCACAGACATTGGCAATCGCGCCCATCGCAGGTTTGCTTGTGCACAAATCCGGTTTGGTTAGTAAAGACAAGATTGCAGCTTCAGACTCCTCTTCATCAGACACGACCATATTCTGGACTTTATGATGCAGTTAGGACCATAATGAGAGAAGAAGGATTTAGTGCACTTTACAGAGGGATTGTTCCTGGTCTATTTCTGGTCTCTCATGGTGCTATTCAGTTCACAGCATATGAGGAGCTTCGTAATGTTCTTGTTGATTTAAAGAATAAGAGAAGTAAAATACATCATCAAAAGCCTGATAAACTGTTGAATTCTGTTGATTATGCTGTTCTTGGAGCAACATCAAAAATTGCTGCAATACTTCTAACCTATCCATTTCAGCAACGACCCAGTGGCGGAGTTCAAAGATATACAGATAGTTGGCATGTTTTAAGGGAAACTGCAAGATTTGAAGGTGTTAGAGGTTTTTACAAGGGAATTACAGCAAACCTTTTGAAAAATGCTCCTGCTTCTTCAATAACATTTATTGTTTATGAAAATGTTCTAAAATTGCTTAAACTAACTAGAAAGAATGACTAA 1017 0.4326 MSTGTTKSQQWQWENAVAGSAAGFATVAVMHPLDVVRTRFQVNDGRVSHLPSYRNTAHAVFTIARSEGLRGLYAGFLPGVLGSTISWGLYFFFYDKAKQRYALNREEKLSPGLHLVSAAEAGGPAGMLSFVVYLESRYLIARDSGGHRHWQSRPSQVCLCTNPVWLVKTRLQLQTPLHQTRPYSGLYDAVRTIMREEGFSALYRGIVPGLFLVSHGAIQFTAYEELRNVLVDLKNKRSKIHHQKPDKLLNSVDYAVLGATSKIAAILLTYPFQQRPSGGVQRYTDSWHVLRETARFEGVRGFYKGITANLLKNAPASSITFIVYENVLKLLKLTRKND 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1844 338 Pfam Mitochondrial carrier protein 252 332 IPR018108 -
Lal16g1844 338 Pfam Mitochondrial carrier protein 11 102 IPR018108 -
Lal16g1844 338 Pfam Mitochondrial carrier protein 159 231 IPR018108 -
Lal16g1844 338 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 156 333 IPR044712 GO:0006862|GO:0055085
Lal16g1844 338 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 127 IPR044712 GO:0006862|GO:0055085
Lal16g1844 338 Gene3D Mitochondrial carrier domain 1 152 IPR023395 -
Lal16g1844 338 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Lal16g1844 338 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 330 IPR018108 -
Lal16g1844 338 PANTHER BNAA09G07970D PROTEIN 156 333 - -
Lal16g1844 338 PANTHER BNAA09G07970D PROTEIN 10 127 - -
Lal16g1844 338 ProSiteProfiles Solute carrier (Solcar) repeat profile. 136 229 IPR018108 -
Lal16g1844 338 SUPERFAMILY Mitochondrial carrier 157 326 IPR023395 -
Lal16g1844 338 Coils Coil 223 243 - -
Lal16g1844 338 Gene3D Mitochondrial carrier domain 155 335 IPR023395 -
Lal16g1844 338 SUPERFAMILY Mitochondrial carrier 10 130 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1844 Lal-Chr16 17497834 17503643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1844 163 338 Chloroplast and Mitochondria Gene Families AT2G47490 27.778 4.74e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1844 K15115 - gmx:100809599 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1844 16 17497834 17503643 Lal16g1844 16 17497834 17503643 ECH