Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1826 ATGGGTACCAAGTGCACACGATTGTTTGATAGGAACAAAAACAAGAATCCATCTCATATAACAACTTTTCAAAGGGATATTGAAAATGATGAATTCCACTTTTCTAGTACTCAATGTCTCTCTTCCTACTACAGTGTTTTTGTCGTTCGCCTAGCAATAATGTTGATGCTAACCATCCTGATTGGGCTGCTTACTATCCTGACATGGCATTTTACAAAGATATATACAACAAAATCTCTTAATAACTTAGCCTATGATCTGCGTTATGAACTTCTACAACGTCCCATTCTGAGGATGTGGAACATTTTGAATTCTACTGCTGAAATTACAACAGTTCAAGTCAAGTTATCCGAGTATGTGATCAGACGCCAAGGCAACGTTGCAACTCAAGGAGAGCAAGTTGAGATGTATGAAGCAATGAAGGATGTAACATGGGCATTGTTTGTTAGCAGAAAAGCCCTGAACTCGATAACTGTCAAATATAGAAACGGATTTGTCCAAGCATTTCATAGAGATCTGAAGGATAACAATACATTTTACATTTACTCTGATCTTACTAATTACTCCATAGGTGCCAGTGGAGATGAAGTTTGGAATGATCAAGACATTCTTGGTAACAAGTCTGTGATTTGGTATCGCGAGCCACTTAACCCTGTCACCGGTGAGAAGATTGGAAAAGCAATTCAAATTGCGCCAGAAGACTCGATAAATATAGCTGGCATCTCTCAAGTGTCAGATGGTGTAGCTTCGTGGCACGTTGCTGTGAGCAAGTTTACAGATTCACCATTGCTTTCGGCAGCATTGCCAGTTCGGGACGCTACGAATACGAGTATTGTGGCAGTTGTGGGCATGACAACTGCATTTTATAGTGTAGGACAGCTAATGAAAGAACTGGTTGAGTTGCATAGTGGTCATATGTATTTGACCTCACGAGAAGGTTACTTACTTGCAACTTCCACAAATGCGCCTTTACTTGAAAATTCGACAAAGGGGCCTATGCTTAAGATGGCTGTTGACTGTGAAAATGATGTAATAAGAGAGGGAGCGGCGTATTTACAGAAAACCTACGGGAATAATCTCCCTCCAAGTCACGAGGTTCATGTAGTGAATGCAAGGCTAGGCCATCAGCAATATTACATTGACTCATTCTTCCTAAACTTGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCAAGAAAGTATATCATGGGGCGGGTAGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATTTGCATCATTGTGTATTATTGTCATTGGATGTGTATGCATTTTGATATTGACAAATGGAGTATCAAAGGAAATGAAACTAAGAGCAGAATTGATCATTCATCTGGAAGCAAGAAGAAAAGCAGAGGCATCAAGCAACTATAAAAGTCAATTTCTTGCAAACATGAGTCATGAACTGAGGACACCAATGGCAGCAGTAATCGGGCTACTTGACATTCTTATTTCAGATGACTGTCTTACAAATGAACAATGTGCAACAGTTACTCAAATACGAAAGTGCTCAACTGCCCTGCTCCGTCTTCTTAATAACATCTTGGATTTAAGCAAGGTGGAATCTGGAAAAATGGTCCTAGAAGATGCAGAATTTGACTTGGGACGGGAACTTGAAGGGCTTGTAGATATGTTCTCTGTGCAATGTGTTAACCATAATGTAGAAATTGTTTTAGACCTGTCTGATGATATGCCAAAGCTAGTACAGGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCGAATTTGATCAACAACTCAATCAAGTTTACTCAATCGGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTCTTACAGTGATAGTTCAAATTTTCCTCTTGAGCAGAAGAAATCAGGGTGTGCGCAAAAGGCAAAAGCTAAGCAACATGAGAACCAAGCAAATATTACATCTAAGAGAGATAACAAAATGATACTTTGGTTTGAAGTTGATGACACGGGCTGTGGTATTGACCAAAGGAAATGGGATTCTGTTTTTGAAAGTTTTGAGCAAGCAGATCCATCAACAACTAGATTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAAGTTTGGTTAAAAAGATGGGTGGAGAAATCAAGGTTGTCGAAAAGGAGGGACCAGGAACGCTGATGCGATTATATCTCTGTCTCACTACACCCGTGGATGCCATAGAGAAGCATTGTCAAGTAGATTTCTCTAACAATGGCTTAGTGGTACTGCTTGCACTTCATGGCAACGTTGGTCGATTAATTACGTCCAACTGGTTACATAAAAATGGGGTGTTCACTTTGGAGGCTTCAGAATGGAATGGATTAACACAAACTCTGAAGGAACTCTTCCATGCGAGATGTTCAGTTATTAATAACGGCTTTGATGCACATTATCCAGTACATGATAGTTTGCGATCTAAACTGCTGAACATACAGGACATTAGGAACCTGACTTTGGTAATTGCTGTTGACATTGGGTTACTAGACTTGAGCACAGATATATGGAAGGAACAGCTTAACTTCCTTCACAAGTACTTCGGTCGAGCAAATTTCGTTTGGGTGCTAAATCATGACACTTCTAATACCATAAAGATGGAGCTTCGCAGGAACGGACATATACTTACGGTCAACAAGCCCCTTTACATAACAAAAATGGTTCATATTTTGGAAGCTGTCATAAAGGAGAGAAATCTCGAGGTACAAAGGAAAAATATGACTACTCCAAGAACCACTACACAAGAGGGTGATTCGCCCAAGTCTCTTGAGATTGATTTTACTCATTGCGATGCTGCTAGCTCAGATGGTTCTGATATAACTGAACTGGGAGGTTCTGATCCTGTTAGTGCCAATGCTGATATACAAAGAGAGAAGCTATCGAGATCCGATGCATCATCGCAATACCAAATGAATAATTGCTTAGTAAGATTAACAAATGAATATTTGGAAGATAATGATTATCCTATGAAGAAAAAGTCATGTGAGAGCAGCCTCAACTCCCACGAAGTCACTGCAGATTTCACAACAAAATCGTCGTCCTCTAGACAATCGTCCATGACAAAAGGAGCAGCGAATGGAAAGAAAACTCTTGAAGGTCTGAGAATACTGCTCGTAGAAGATACGCTATTAATTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCCAATGTTGTAGCTGTAGGTGATGGACAGCAGGCAGTGGATGCTCTATATGGTGTTCTCGGTGCTGAAGATTGTAGAAGGGAGTCTCAACTAAAGGAAAGAAACGCAAGATCATCTCAAACCGAGATTCTCAGTTGCCTTCCTCCATATGATTTAGTCCTAATGGATTGTCAGATGCCAAAAATGGATGGGTATGAAGCAACAAAAGCAATAAGGAAATCAGAAAAGGGAACAGGAATGCACATTCCAATTGTTGCTCTAACAGCTCATGCAATGTCATGTGATGAAGCCAAATGTCTAGCTGTGGGAATGGATGCTTATTTAACAAAACCAATTGACTTCAAACTCATGGAGTCCACTATTCTTTCACTCACAACAAAAACATCATAA 3582 0.4003 MGTKCTRLFDRNKNKNPSHITTFQRDIENDEFHFSSTQCLSSYYSVFVVRLAIMLMLTILIGLLTILTWHFTKIYTTKSLNNLAYDLRYELLQRPILRMWNILNSTAEITTVQVKLSEYVIRRQGNVATQGEQVEMYEAMKDVTWALFVSRKALNSITVKYRNGFVQAFHRDLKDNNTFYIYSDLTNYSIGASGDEVWNDQDILGNKSVIWYREPLNPVTGEKIGKAIQIAPEDSINIAGISQVSDGVASWHVAVSKFTDSPLLSAALPVRDATNTSIVAVVGMTTAFYSVGQLMKELVELHSGHMYLTSREGYLLATSTNAPLLENSTKGPMLKMAVDCENDVIREGAAYLQKTYGNNLPPSHEVHVVNARLGHQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGRVDERAFKTLVILIFASLCIIVIGCVCILILTNGVSKEMKLRAELIIHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKMVLEDAEFDLGRELEGLVDMFSVQCVNHNVEIVLDLSDDMPKLVQGDSARVVQIFANLINNSIKFTQSGHIILRGWCENPNSYSDSSNFPLEQKKSGCAQKAKAKQHENQANITSKRDNKMILWFEVDDTGCGIDQRKWDSVFESFEQADPSTTRLHGGTGLGLCIVRSLVKKMGGEIKVVEKEGPGTLMRLYLCLTTPVDAIEKHCQVDFSNNGLVVLLALHGNVGRLITSNWLHKNGVFTLEASEWNGLTQTLKELFHARCSVINNGFDAHYPVHDSLRSKLLNIQDIRNLTLVIAVDIGLLDLSTDIWKEQLNFLHKYFGRANFVWVLNHDTSNTIKMELRRNGHILTVNKPLYITKMVHILEAVIKERNLEVQRKNMTTPRTTTQEGDSPKSLEIDFTHCDAASSDGSDITELGGSDPVSANADIQREKLSRSDASSQYQMNNCLVRLTNEYLEDNDYPMKKKSCESSLNSHEVTADFTTKSSSSRQSSMTKGAANGKKTLEGLRILLVEDTLLIQRVATIMLEKMGANVVAVGDGQQAVDALYGVLGAEDCRRESQLKERNARSSQTEILSCLPPYDLVLMDCQMPKMDGYEATKAIRKSEKGTGMHIPIVALTAHAMSCDEAKCLAVGMDAYLTKPIDFKLMESTILSLTTKTS 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1826 1193 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 454 534 IPR036097 GO:0000155|GO:0007165
Lal16g1826 1193 PRINTS Bacterial sensor protein C-terminal signature 656 670 IPR004358 GO:0016310|GO:0016772
Lal16g1826 1193 PRINTS Bacterial sensor protein C-terminal signature 674 684 IPR004358 GO:0016310|GO:0016772
Lal16g1826 1193 PRINTS Bacterial sensor protein C-terminal signature 691 709 IPR004358 GO:0016310|GO:0016772
Lal16g1826 1193 ProSiteProfiles Response regulatory domain profile. 1042 1189 IPR001789 GO:0000160
Lal16g1826 1193 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 521 727 IPR036890 -
Lal16g1826 1193 Pfam His Kinase A (phospho-acceptor) domain 467 532 IPR003661 GO:0000155|GO:0007165
Lal16g1826 1193 ProSiteProfiles Histidine kinase domain profile. 473 731 IPR005467 -
Lal16g1826 1193 SUPERFAMILY CheY-like 1039 1188 IPR011006 -
Lal16g1826 1193 MobiDBLite consensus disorder prediction 1006 1032 - -
Lal16g1826 1193 CDD REC_hyHK_CKI1_RcsC-like 1043 1185 - -
Lal16g1826 1193 SMART HisKA_10 466 532 IPR003661 GO:0000155|GO:0007165
Lal16g1826 1193 CDD HisKA 467 528 IPR003661 GO:0000155|GO:0007165
Lal16g1826 1193 Gene3D - 534 732 IPR036890 -
Lal16g1826 1193 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1190 - -
Lal16g1826 1193 Pfam Response regulator receiver domain 1043 1182 IPR001789 GO:0000160
Lal16g1826 1193 MobiDBLite consensus disorder prediction 941 970 - -
Lal16g1826 1193 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 579 730 IPR003594 -
Lal16g1826 1193 Gene3D - 1018 1188 - -
Lal16g1826 1193 SMART REC_2 1041 1185 IPR001789 GO:0000160
Lal16g1826 1193 Gene3D - 454 533 - -
Lal16g1826 1193 SMART HKATPase_4 579 731 IPR003594 -
Lal16g1826 1193 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1826 Lal-Chr16 17377992 17386250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1826 11 1193 Histidine Kinase Gene Family AT2G17820 63.224 0.0 1493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal16g1826 HATPase_c 2.3e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1826 - - gmx:100776856 1863.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1826 16 17377992 17386250 Lal16g1826 16 17377992 17386250 ECH
Lal16g0133 16 788001 794436 Lal16g1826 16 17377992 17386250 PCT
Lal16g1826 16 17377992 17386250 Lal16g0133 16 788001 794436 PCT