Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1819 ATGTGTTCCATTTCAAAGGAAAGACATAAGAAACCAACAAACATTAAAATGGGTGCATCACAAAAATGGTTAAGAATTGTTCGAAGAAAGTTCCTCAGATCATCCAATAAAGACATCATTCTACCTCGTACAAGCATTTGCACCAATCAAAGTGATGAAGCTATACTTAACAAAGAAGATTTCAATTTGCCTATACAAACTTCCACCAACAACCTAGCGGAAGTTGTCGCCGCAGTTAAAATCCAAGCTTATTTTCGGGGTCATCTCGCGAGACGAGCATTCGAAGCTCTAAAAAGTTTGGTGAAGCTACAAGCATTGGTTAGAGGGGTTTTCGTAAGGAAACAATCACAAATAGCAATGCAATGTATGAATGTAATTATTAGATTGCAAGTAAGGGTTCGTGCAAGACAACTTTCAGGAAAGTTTGGTAATGAGTGA 438 0.3767 MCSISKERHKKPTNIKMGASQKWLRIVRRKFLRSSNKDIILPRTSICTNQSDEAILNKEDFNLPIQTSTNNLAEVVAAVKIQAYFRGHLARRAFEALKSLVKLQALVRGVFVRKQSQIAMQCMNVIIRLQVRVRARQLSGKFGNE 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1819 145 ProSiteProfiles IQ motif profile. 74 102 IPR000048 GO:0005515
Lal16g1819 145 PANTHER OS04G0561100 PROTEIN 18 140 - -
Lal16g1819 145 ProSiteProfiles IQ motif profile. 98 124 IPR000048 GO:0005515
Lal16g1819 145 SMART iq_5 96 117 IPR000048 GO:0005515
Lal16g1819 145 SMART iq_5 73 95 IPR000048 GO:0005515
Lal16g1819 145 Pfam IQ calmodulin-binding motif 98 115 IPR000048 GO:0005515
Lal16g1819 145 Pfam IQ calmodulin-binding motif 77 94 IPR000048 GO:0005515
Lal16g1819 145 Gene3D - 74 121 - -
Lal16g1819 145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 118 IPR027417 -
Lal16g1819 145 PANTHER IQ-DOMAIN 5-RELATED 18 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1819 Lal-Chr16 17325445 17326711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1819 17 138 IQD Protein Family AT3G51380 50.000 4.38e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1819 - - gmx:100788207 167.548