Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1811 ATGCCGAAGGTCAAAGCTGATTCCAAACCTGCCGATAACAAGTTGAAGAGGAAAAGTGCTGGAAGTGGGAATAAGAAATCTAAGAAAGCTGCTAAGGATCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTTTTCATGTCTGAATTCAGAGAGCAATACAAGAAAGATTATCCTGAAAACAAATCTGTAGCTAATGTCAGTAAAGCTGGTGGTAGCAAATGGAAGTCAATGTCTGATGCTGACAAAGCTCCCTACATTGCCAGGGCTGAGAAGAAGAAAGAAGAGTATGGAAGGACTATTTTGGCCTATAATAGGAAATTGGAGGGAAAGAATCCTTCAGAGGAAGATGAATCTGATAAGTCTAAGTCTGAAGTGCATGATGATGATGATGAAGATGAGGAAGAAGAGGATGATGAGTGA 426 0.4085 MPKVKADSKPADNKLKRKSAGSGNKKSKKAAKDPNKPKRPPSAFFVFMSEFREQYKKDYPENKSVANVSKAGGSKWKSMSDADKAPYIARAEKKKEEYGRTILAYNRKLEGKNPSEEDESDKSKSEVHDDDDEDEEEEDDE 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1811 141 SUPERFAMILY HMG-box 24 106 IPR036910 -
Lal16g1811 141 Pfam HMG (high mobility group) box 37 105 IPR009071 -
Lal16g1811 141 MobiDBLite consensus disorder prediction 110 127 - -
Lal16g1811 141 Coils Coil 88 108 - -
Lal16g1811 141 MobiDBLite consensus disorder prediction 1 19 - -
Lal16g1811 141 MobiDBLite consensus disorder prediction 104 141 - -
Lal16g1811 141 CDD HMGB-UBF_HMG-box 37 98 - -
Lal16g1811 141 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Lal16g1811 141 SMART hmgende2 36 107 IPR009071 -
Lal16g1811 141 Gene3D High mobility group box domain 20 123 IPR036910 -
Lal16g1811 141 MobiDBLite consensus disorder prediction 56 81 - -
Lal16g1811 141 MobiDBLite consensus disorder prediction 1 44 - -
Lal16g1811 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 139 - -
Lal16g1811 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 139 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1811 Lal-Chr16 17269848 17272233 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lal16g1811 HMG_box 4.2e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1811 K25507 K22507 gmx:100305957 158.688