Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1804 ATGACTCGCACGCTCAGAATCCTCCAATCCATTAACAGCGCCACCGCGCCGCCGTCGCCGGAGACAGCTTCGACGGAATCAGACTATGTCGTAATCCTAGCCGCCCTTCTTTGCGCCCTCATCTGCGTCGTCGGTCTCATCGCCGTTGCTCGCTGCGCATGGCTCCGCCGTAGCTCAGTCCCCACCGCCGCCGGTAATTCTCCGACACAAACCCTAGCAAACAAAGGCCTCAAGAAGAAGGTCCTCAATTCACTTCCAAAGTTCACTTATCTCGACGGCGACGCCGGCGGAAGTAGCAGCAACAAATGGATACCTACTTCAGAGTGCGCTATTTGTTTGTCGGAGTTTTCCGCCGGCGACGAGGTCCGGGTGGTGCCGAACTGCGGCCACGGGTTCCACATGGCGTGCATCGACACATGGCTTGGTTCTCACTCCTCATGTCCATCATGTCGTGCTTTACTTCTTCCGGCGAGGTGCCAGAAGTGCGGTCAGTTACCGGCGGTGGTTGGTCGTGAAACAGAGTTGAAATTCGTAGGCGGCGATGATGGCGGTGCCGCTGGTAATGCGAACTGTAATAGTGGTTTCTTGCCTTGA 594 0.5673 MTRTLRILQSINSATAPPSPETASTESDYVVILAALLCALICVVGLIAVARCAWLRRSSVPTAAGNSPTQTLANKGLKKKVLNSLPKFTYLDGDAGGSSSNKWIPTSECAICLSEFSAGDEVRVVPNCGHGFHMACIDTWLGSHSSCPSCRALLLPARCQKCGQLPAVVGRETELKFVGGDDGGAAGNANCNSGFLP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1804 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 155 IPR013083 -
Lal16g1804 197 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 6 192 - -
Lal16g1804 197 SMART ring_2 109 150 IPR001841 -
Lal16g1804 197 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 6 192 - -
Lal16g1804 197 CDD RING-H2_PA-TM-RING 108 151 - -
Lal16g1804 197 Pfam Ring finger domain 108 151 IPR001841 -
Lal16g1804 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Lal16g1804 197 SUPERFAMILY RING/U-box 82 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1804 Lal-Chr16 17148228 17148821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1804 1 162 C3H Transcription Factor Family AT1G20823 58.621 8.28e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1804 - - gmx:100787383 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1552 15 17531089 17531730 Lal16g1804 16 17148228 17148821 LSH
Lal16g0367 16 2211371 2212024 Lal16g1804 16 17148228 17148821 PCT
Lal15g0305 15 2039303 2039950 Lal16g1804 16 17148228 17148821 PCT
Lal23g1188 23 13239991 13240638 Lal16g1804 16 17148228 17148821 PCT
Lal16g1804 16 17148228 17148821 Lal16g0367 16 2211371 2212024 PCT
Lal16g1804 16 17148228 17148821 Lal15g0305 15 2039303 2039950 PCT
Lal16g1804 16 17148228 17148821 Lal23g1188 23 13239991 13240638 PCT