Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1798 ATGACCCTTACTACTGATCCACCACCGCCACCAGATTCCACCACCGCCACCATCAACGGCGACACCACCTCCGAACTAAACCCAGAACCACCATTTCCAACCCCTCCCGAAGAACTCCGAGTCCCAATTTCATGGCCAGAAAATGGGAACCTGAACATTGATTGGATCCACAATCTCATCTCTTCTTTCGATTGGTCTTCACGAAATCTCTCTCCTTCTCAGTTACCTTCTCTCTTCCCCGTTCAAGTTTTCGATTCTCTCGTTCTCACTGCTTCTAAGATTCTTCATAAGGAACCCAATTGCGTTACTATTGACCCATTTCGCATTAACCCTGATTCATCAAATTCCGCCACCACCGCCACCGCCGCCGCCACCGTTGTGGTGGTTGGAGATGTTCATGGACAATTGCATGATCTGATGTCCCTGCTTAGAGATGCTGGTTATCCTTGTGAAGATCGAATATTTGTTTTCAATGGTGATTATGTTGATCGAGGAGCTTGGGGCCTTGAAACTTTCTTGCTCTTATTGGCATGGAAGGTATTCATGCCACATAACATATATTTGCTCCGTGGTAATCACGAATCGAAATACTGTACATCTGTTTATGGCTTTGAGAAAGAAGTGATGGTAAAATATGGTGATAAAGGTAAGCATGTGTATCGGAAATGTTTGATGTGCTTTGAAGGTCTTCCCTTGGCTTCTATTATTGCGGGGAGAGTATACACCGCTCATGGAGGACTTTTCCGCAGTGTAACTGTGACACCGTCAAAGAGATTCAAAGGAAAGAAGAACCGGAAGATTAATCTTAATTCTGATAGCAAAGTTCTATCCCTTGGTTCCTTGGAAGAATTGTCTAAGGCTCGTCGATCAGTTCTTGATCCTCCTTGGGAAGGCTCAAACTTGATTCCTGGAGATGTTCTGTGGTCTGATCCATCAAAGTCACCTGGTCTTGCTCCAAACAAAGAAAGAGGGATTGGCTTATTGTGGGGTCCTGATTGCACTGAAGAATTTTTGAAGAAGTACCAATTAAAGTTGATCATCAGGTCACATGAAGGTCCTGATGCTCGGGAAAAGAGGGATGGTTTTGGTGGAATGGCTGAAGGTTACACTATTGATCATATTGTCGAATCTGGAAAACTCATCACCGTGTTTAGTGCTCCAGATTACCCACAATTTCAGGCAACAAAGGAAAGGTATAACAACAAAGGGGCCTATGTTGTTCTTGAACCCCCAAATTATGACAACCCTATATTTCATGAATTTTCAGCAGTCACTCCTAGGCCAAAGGTGAATCCATATTACGATTTTGAAGATGTGATAGATTCGGACGAAGAATTGGACTTGGCGTCAATGGTAAGTTCCTAA 1365 0.4374 MTLTTDPPPPPDSTTATINGDTTSELNPEPPFPTPPEELRVPISWPENGNLNIDWIHNLISSFDWSSRNLSPSQLPSLFPVQVFDSLVLTASKILHKEPNCVTIDPFRINPDSSNSATTATAAATVVVVGDVHGQLHDLMSLLRDAGYPCEDRIFVFNGDYVDRGAWGLETFLLLLAWKVFMPHNIYLLRGNHESKYCTSVYGFEKEVMVKYGDKGKHVYRKCLMCFEGLPLASIIAGRVYTAHGGLFRSVTVTPSKRFKGKKNRKINLNSDSKVLSLGSLEELSKARRSVLDPPWEGSNLIPGDVLWSDPSKSPGLAPNKERGIGLLWGPDCTEEFLKKYQLKLIIRSHEGPDAREKRDGFGGMAEGYTIDHIVESGKLITVFSAPDYPQFQATKERYNNKGAYVVLEPPNYDNPIFHEFSAVTPRPKVNPYYDFEDVIDSDEELDLASMVSS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1798 454 ProSitePatterns Serine/threonine specific protein phosphatases signature. 189 194 IPR006186 GO:0016787
Lal16g1798 454 Gene3D - 74 448 IPR029052 -
Lal16g1798 454 PRINTS Serine/threonine phosphatase family signature 125 152 IPR006186 GO:0016787
Lal16g1798 454 PRINTS Serine/threonine phosphatase family signature 155 182 IPR006186 GO:0016787
Lal16g1798 454 PRINTS Serine/threonine phosphatase family signature 188 212 IPR006186 GO:0016787
Lal16g1798 454 PRINTS Serine/threonine phosphatase family signature 225 251 IPR006186 GO:0016787
Lal16g1798 454 PRINTS Serine/threonine phosphatase family signature 285 312 IPR006186 GO:0016787
Lal16g1798 454 PRINTS Serine/threonine phosphatase family signature 379 395 IPR006186 GO:0016787
Lal16g1798 454 Pfam Calcineurin-like phosphoesterase 125 353 IPR004843 GO:0016787
Lal16g1798 454 SUPERFAMILY Metallo-dependent phosphatases 74 427 IPR029052 -
Lal16g1798 454 SMART pp2a_7 79 428 IPR006186 GO:0016787
Lal16g1798 454 CDD MPP_PP7 45 435 IPR041754 -
Lal16g1798 454 MobiDBLite consensus disorder prediction 1 39 - -
Lal16g1798 454 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 7 29 451 - -
Lal16g1798 454 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 29 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1798 Lal-Chr16 17113540 17118510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1798 42 345 Calmodulin-binding Proteins AT5G63870 70.164 1.06e-157 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1798 K04460 - gmx:100810695 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1798 16 17113540 17118510 Lal16g1798 16 17113540 17118510 ECH