Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1794 ATGGAAAGGTACAAGTTAATTAAGGAAGTTGGTGATGGATCATTTGGCACGGTCTGGAGAGCTATTAATAAGCAAAATGGTGATATTGTTGCAATCAAGAAAATGAAGAAGAAATATTACTCATGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGTCATTGCGGAAAATGAATCACCAAAATATCGTGAAGTTGAAGGAAGTTATTCGAGAAAGTGACATTCTGTTCTTCGTTTTTGAGTATATGGAGTTCAACCTCTACCAACTTATGAAAAAGCGGGAGAATCCGTTTTCTGAAGGTGAAGTTAGAAACTTGTGTTTTCAAGTTTTCCAAGGTCTTTCTTACATGCACCAGCGTGGATACTTCCACCGTGATTTGAAGCCAGAAAACCTGCTGGTCACCAAGGATATCATCAAAATTGCTGATTTTGGCCTAGTCCGAGAGATCAGTTCACAGCCACCATACACTGAGTATGTCTCCACCCGATGGTATCGTGCTCCTGAAGTCCTGCTTCAGTCGTATCTGTATAGCTCCAAAGTCGACATGTGGGCGATGGGTGCTATTATGGCTGAGTTGTTCACTCTACGTCCTCTGTTTCCGGGTGCCAGTGAAGCGGATGAGATTTACAAAATATGCAGTGTCGTAGGTAGTCCAACTACTGAATCTTGGACTGATGGACTCAAACTTGCTAGGGACATCAACTTTCAGTTTCCACAGCTTGCTGGTGTACATCTCTCAGTACTGATTCCATCCGTAAGTGATGATGCAATCAGCCTTATCACTAGTGCTGTGTTTTCTTCTGTTCTTCGTGTTCTATTTATCAAGTCTCTTTGCTCATGGGATCCATGCAAAAGACCAACAGCAGCAGAGGTCCTTCAGCATCCTTTCTTCCAGAGTTGCTTTTACATCCCTCCATCCCTTCGCATCAAAGCAGTAGCCAGAACTCCGCCATCTTCTAGCGTCAGGGGAGCATTAGATCGGCAAGCCGTCAAGGGACATTCTGTTGCTTTGCCTAATTCAAAGCTCACCAATATTTTTTCTTCACCAAAATTACATCCATCTTTAGCTTCAGGTGTGCAACGCAAGCTGGATATGGCAAATGAAGATGGAGTTAAGAACGATAAGTCACTGAAGACTAGTAGGCAACCAAAATATCGCCCTCCTGGAAAGGACAGCCCAAGTTCTACTAACAAGGTTCAGAATGCAAGAGGGGTTTCAGAAACTACGGAGAAGTTCGCTAATATGTCCGTTGGTACACGAAGATGGTCGTTGGGTCAGCCCCTCTTGCCTACACTGAAGAACAGAGTCAATTTGGCTTCTGAATCTGGAAACTTGGTCAGGCCTGCACATGTTCCAACTACAAGAAAAGTTACCAGATGA 1380 0.437 MERYKLIKEVGDGSFGTVWRAINKQNGDIVAIKKMKKKYYSWEECVNLREVKSLRKMNHQNIVKLKEVIRESDILFFVFEYMEFNLYQLMKKRENPFSEGEVRNLCFQVFQGLSYMHQRGYFHRDLKPENLLVTKDIIKIADFGLVREISSQPPYTEYVSTRWYRAPEVLLQSYLYSSKVDMWAMGAIMAELFTLRPLFPGASEADEIYKICSVVGSPTTESWTDGLKLARDINFQFPQLAGVHLSVLIPSVSDDAISLITSAVFSSVLRVLFIKSLCSWDPCKRPTAAEVLQHPFFQSCFYIPPSLRIKAVARTPPSSSVRGALDRQAVKGHSVALPNSKLTNIFSSPKLHPSLASGVQRKLDMANEDGVKNDKSLKTSRQPKYRPPGKDSPSSTNKVQNARGVSETTEKFANMSVGTRRWSLGQPLLPTLKNRVNLASESGNLVRPAHVPTTRKVTR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1794 459 MobiDBLite consensus disorder prediction 389 412 - -
Lal16g1794 459 PANTHER CYCLIN-DEPENDENT KINASE F-4-LIKE ISOFORM X1 1 439 - -
Lal16g1794 459 SUPERFAMILY Protein kinase-like (PK-like) 1 301 IPR011009 -
Lal16g1794 459 MobiDBLite consensus disorder prediction 367 412 - -
Lal16g1794 459 Pfam Protein kinase domain 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1794 459 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 439 - -
Lal16g1794 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Lal16g1794 459 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lal16g1794 459 MobiDBLite consensus disorder prediction 367 385 - -
Lal16g1794 459 ProSiteProfiles Protein kinase domain profile. 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1794 459 SMART serkin_6 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1794 459 CDD STKc_MAK_like 4 297 - -
Lal16g1794 459 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Lal16g1794 459 Gene3D Transferase(Phosphotransferase) domain 1 84 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1794 Lal-Chr16 17076798 17084622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1794 1 304 Core Cell Cycle Gene Families AT3G48750 33.333 7.22e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Lal16g1794 Pkinase 5.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1794 K08829 - gmx:100819558 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1794 16 17076798 17084622 Lal16g1794 16 17076798 17084622 ECH