Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1793 ATGGAGAAAACAGGATCATCAGATCACGTTGTTCTTTTTGTTGAGCAAAATAACCCTAAAGTTTCTTCTATGGACATTGAAAATGGCAAGAATGATGAGAAACCAAAACACCCTTTAAGGGTAAAAAACCTTAGCCGTCTCAGCTTCTCAAAACCCAAGTCCAGAATCCAAGAATATAACTACATACCCCATAAGAGAGTAACAATAGCCTCTGAAGAAAATGATATTCAATTCAATGATGAAGAAGAAGAAGAAGAAGAGAATGATAAATGGGATCTAGATGAAGAAGATATTGAAGAAAATGATGAAGAAAATAATGGTTATTCAAAGTCTCATAAAAAGAGGAATTGTAAGGTTAAATGGAGGCTTTTATTGGAATGGATTTTGTTTCTTAACATAGTGGCTTGTTTGGTTTGTTCTCTCATTATAAGTTCAATTAAGAATATTCATATATTGGGTTTGGAAATATGGAAGTGGTGTTTGATGGCAATGGTTACTTTTAGTGGCCGTTTAGTTTCTGGTTGGTTAACTGGTGTAACAGTTTTAGTGCTTGAGAGAAACTTCATGTTAAGAGATAAAGTGTTGTACTTCATTTATGGACTCAGGAAGAGCATCAGAAACTGTTTGTGGTTAGGTCTTGTTTTGCTTTCATATTGGAGTGTTGTATTTGAGGATGTACACAAGAAAAATCACAACTTCATCAACAAGGCATTAGTGGCTGTGTTAGTGGCTGCAACCATATGGCTTGTGAAGATTGTGTTGGTGAAAATGCTTGCCTCTTCATTCCATGTCACAACATACTTTGACAGAATGAAAGAGAGTGTTTTTCATCACTATATATTAGAAACTTTGTCTGGTCCACCAATGCAAGATGCTGAAGAAATATTGAAGCAACAGCACCTAGCAGGATCAAAATCCATGCCAACTAGGTTTAAGGATATAAAGAACATGTACAAGTCAAAGAAATTTGGGTCAAGAAAGATTGATATGGAGAAGTTGAAAGAAGTTAGCATGGATAGGTCAAAATCTGCATGGAGTGTGAAAAGACTTGTTAACTATGTTAGGTCTTCAGGTTTATCCACAATTTCAACAACTGTGGATGATTTTGGTAATACTGATTCTGAGATCAGTAGTGAGTGGCAAGCTAGAAATTTTGCACAAAGGATTTTCAACAATGTTGCCAAACCTGGAGCCAAGTACATTGAAGAGGAGGATCTCATGAGATTTTTGAAGAGGGTTGAGATACATACCATATTCCCACTCTTTGAAGGTGCCCTTGAAACTGGAAAGATCAGCAGATCTTCATTTAGAAATTGGATGATTGGAGCTTATTATGAAAGAAAGGCTCTAGCGCAATCACTGAATGATACAAAAACAGCAGTGCAACAACTTCACAAATTAGCAAGTGGAGTTGTGAGTGTAATAATAATAATTGTGATGCTATTGGTGATGGAGGTGGCTACAATAAAGATAATACTTTTCTGCATTACACAAACACTATTAATAGGTGTTGCTTTCCAAGGTACTTGCAAGACTGTTTTAGAAGCCATTATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGAGATCGTTGCGTCATTGATGGAGTTCAGGGGAAAGCAGGACCCGACCCTACCCGCTCACCTGGTATGGCCCGATCATTATCGGTGTTGAACAGGATGATTGTGGAAGAGATGAATATCTTGACAACAGTATTTCTTCGATATGACAATGGGAAAATCTACTACCCTAATGCAATTTTGCTCACTAAGCCAATAAGCAATTTTTATAGGAGTCCAGAGATGAGTGATACAATTGATTTCACTATTGATGCTACAACTCCCATGGAGACTATTATTGCAGTTAAAAAATCAATACAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCATAGTGTGATAGCAAAACAAGTAGAAAATGTGGACAAATTGAAGTTGTGTTTATGTGTGCAACATACTATCAACCATCAAAACTATGGTGAGAGAAACATAAGGATAACAGAACTACTCTTGGAATTGAAAAAGATATTTGAGATCCATGGTATCAAGTATCATCTTCTTCCTCAAGAAATCCACATTACCCATATTAACATTAATGAAAATGGGAGAGTTTTGTTTCAATCATGA 2157 0.3621 MEKTGSSDHVVLFVEQNNPKVSSMDIENGKNDEKPKHPLRVKNLSRLSFSKPKSRIQEYNYIPHKRVTIASEENDIQFNDEEEEEEENDKWDLDEEDIEENDEENNGYSKSHKKRNCKVKWRLLLEWILFLNIVACLVCSLIISSIKNIHILGLEIWKWCLMAMVTFSGRLVSGWLTGVTVLVLERNFMLRDKVLYFIYGLRKSIRNCLWLGLVLLSYWSVVFEDVHKKNHNFINKALVAVLVAATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYILETLSGPPMQDAEEILKQQHLAGSKSMPTRFKDIKNMYKSKKFGSRKIDMEKLKEVSMDRSKSAWSVKRLVNYVRSSGLSTISTTVDDFGNTDSEISSEWQARNFAQRIFNNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWMIGAYYERKALAQSLNDTKTAVQQLHKLASGVVSVIIIIVMLLVMEVATIKIILFCITQTLLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVQGKAGPDPTRSPGMARSLSVLNRMIVEEMNILTTVFLRYDNGKIYYPNAILLTKPISNFYRSPEMSDTIDFTIDATTPMETIIAVKKSIQMYIESKPKYWNPKHSVIAKQVENVDKLKLCLCVQHTINHQNYGERNIRITELLLELKKIFEIHGIKYHLLPQEIHITHININENGRVLFQS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1793 718 MobiDBLite consensus disorder prediction 10 25 - -
Lal16g1793 718 Gene3D - 525 596 IPR023408 -
Lal16g1793 718 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 560 715 - -
Lal16g1793 718 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 538 - -
Lal16g1793 718 PIRSF Memb_At2g17000 3 714 IPR016688 -
Lal16g1793 718 MobiDBLite consensus disorder prediction 1 38 - -
Lal16g1793 718 Coils Coil 69 101 - -
Lal16g1793 718 MobiDBLite consensus disorder prediction 75 103 - -
Lal16g1793 718 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 560 715 IPR016688 -
Lal16g1793 718 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 538 IPR016688 -
Lal16g1793 718 MobiDBLite consensus disorder prediction 73 111 - -
Lal16g1793 718 Pfam Mechanosensitive ion channel 470 693 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1793 Lal-Chr16 17052315 17061851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1793 7 707 Mechanosensitive Ion Channel Family AT5G12080 40.408 2.55e-180 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1793 K22048 - gmx:100813521 1046.57