Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1779 ATGCGTATCGGCGTATCAGAAACGTATCGTATCCGACACACATATCCATATCTATGCTTCATAGCTTTAGAGTTCCATGAAGAGTTTGATTTTGAGGCCATGAATGAAAAGTTCAGAAAGGATGAAGTGTGGGGTTCTCTTGGGAGAGGAACTGAGAAAGTGGAAGAGAATGATCACTACTGTCTAATACCAAACCCCAAGCCTGCATATAACAAAGATGAATTTTTTGACTCAATTTCTGGTAATTCTCTTACTGGTGGGTTGAGGAATGGACAAAATCGTTTCTCTGAGAGAATGAAGCAGGATACTGAGACATTTGACAATTTTCAACAGAGGCCTACTAACTTCGGCTATGGTGGCAATCATGGTGGAAATTTTCGGGGCGCAAATAGCTCGGGAAGAAGGGGTTATGGCTACTATGGTGGGAGAAGCAACAAAACAAGTTCGTTATTTTCCTCACTACTTACCTACAAGATGAGCAATCGCATGGAAGAAATAAAAGACATGTTGGCCAAAATGAACGACGGTGAGAGTGTTTCTTCCGTACCCATCAAGTTGAATCACCTTAATGTGATTGTGTCGATTCTTGCGCCCGAATATTACACTGAACAGCAATTGTCACAACTCAAATCGTTTTCTGAACAGGAGATTGGTCAAACAAGCTTGGTTGCAGAACCTACAAGCAAAAAAAGGAGCTGCTGCTCCGAAACTGAACAAATGTGTGGAGAAAAAACAATGAAAGAAAAGAACAAGAAGTCTAAAAAGATGCCACTGCCAATTGTTGCTAAAACACCACCATCAGAGTTGCCTGGTACATTCATGGATCGGATCACGGAGTTAAATGGAAGTGATATCAAATTTCTGATGCATAAGAAGCTTTGCTTGTCAGATTTGTTGAAAAATAACAACCGTCTTTCGATGCCAAAAAGTCAGATTGGATTTGAGTTCCTTACTGAAGATGAGAAGGAAAAACTAAATGAAAGAAAGGAAGACCCAAGGGCCCGACTCATTGGGACGGAGATAACTTTGATAGATCCATGTCTTAGAGAATACAAGATAACACTCAAGAAATGGGAGATGAAGGGAGTGATCTACAATCTAGTGACAAATTGGCATAAAGTGGTGGAAGATAACAACTTTAAAATGAATCAAGAACTCGACATATGGTCCTTTAGAGTTGATGGCAAACTATATTTTGTACTGAATAATTGTGAATGTAGATGA 1224 0.3971 MRIGVSETYRIRHTYPYLCFIALEFHEEFDFEAMNEKFRKDEVWGSLGRGTEKVEENDHYCLIPNPKPAYNKDEFFDSISGNSLTGGLRNGQNRFSERMKQDTETFDNFQQRPTNFGYGGNHGGNFRGANSSGRRGYGYYGGRSNKTSSLFSSLLTYKMSNRMEEIKDMLAKMNDGESVSSVPIKLNHLNVIVSILAPEYYTEQQLSQLKSFSEQEIGQTSLVAEPTSKKRSCCSETEQMCGEKTMKEKNKKSKKMPLPIVAKTPPSELPGTFMDRITELNGSDIKFLMHKKLCLSDLLKNNNRLSMPKSQIGFEFLTEDEKEKLNERKEDPRARLIGTEITLIDPCLREYKITLKKWEMKGVIYNLVTNWHKVVEDNNFKMNQELDIWSFRVDGKLYFVLNNCECR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1779 407 Pfam B3 domain-containing protein At2g31720-like 270 377 IPR005508 GO:0003677
Lal16g1779 407 ProSiteProfiles DFDF domain profile. 17 53 IPR025762 -
Lal16g1779 407 MobiDBLite consensus disorder prediction 109 129 - -
Lal16g1779 407 Pfam FDF domain 24 108 IPR019050 -
Lal16g1779 407 SUPERFAMILY DNA-binding pseudobarrel domain 288 401 IPR015300 -
Lal16g1779 407 Gene3D - 278 405 IPR015300 -
Lal16g1779 407 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 159 402 IPR005508 GO:0003677
Lal16g1779 407 SMART FDF_2 23 110 IPR019050 -
Lal16g1779 407 PANTHER DUF313 DOMAIN PROTEIN 159 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1779 Lal-Chr16 16864790 16867670 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1779 277 401 B3 DNA Binding Superfamily AT1G05930 26.772 2.03e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1779 K18749 - lang:109350531 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1779 16 16864790 16867670 Lal16g1779 16 16864790 16867670 ECH