Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1767 ATGGATTCTATTCAAACCCCAAATAACAACACCACCACTTTTCTACCACCACCACCTGGCCTCCACATTCCCACCACCACCACCGCCGCCGCAACCACTTCCTACGGCGGTGGAGTTTCAATCCCTAACTTGAAAGTTCCAAAGCCTGAACCTTTTGATGATTCCGACGTTGAAAAACAACTCCAATTGTACTCTGACTTCTGTCGTGTCTCAAATCTCTTCCGTGAAGCTTTTGGGAATGTTGATTTTCCGAGTGACATTGATTCGGAGCTTGTTGATGTTAAGGTTTCCATTTCTGACCCTAATGGTGTCGTGGATTTGAACCTTCCTGCTCCGAATTCGCAGCCGGAGGAAGAAAGTTTGGATTTTTTGGACCCTGATTCGGGTGCAATTGTTCCAGTGCCTCCCATTCAGGAGGTTGCGGTTACCACGCCGAGGCGAAAGCAGAGCCGTGTGAAGGAGTTGGTGAGGGTGGTGGATCTTGGAGTGAAGGATCAGGTTCATTTTAGGGAGGTGGTTAGGAAGACTAGGATGGTGTATGAGTCACTGCGTGTGTTGACATCGGTTGAGGAGGAGAAAAGAGCAGTTGCTGCTGCGGAAGAGGAGAAAAGAATGATGGCTGCCATGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCGGCTGCTTTGGCTGATGGTGTTGCTGCTGAAGGCAGTGGAAAGCCAGAGGGAAGTGGTAGCAATGGCAGCAGGACTTATAGGAGGCTGCGGCTGCGAGGGGACTTGAGGGCAGCATCATTGATGAGGGATCAAGGTTTGTGGCTGAACCGCGATAAACGGATTGTTGGCGCCACTCCAGGTATATATGTTGGTGATATTTTCTTGTTTAGGATGGAATTGTGTGTGCTTGGGTTGCATGGTCAAATACAGGCTGGGATTGATTACCTCCCTGGTAGCATGAGCTCCAATGGAGAGCCAATAGCTACTAGTGTTATTGTTTCGGGCGGGTATGAGGATGACTTGGACGATGGTGAAGTTATAGTGTACACTGGTCAAGGTGGGCAAGAGAAGAATTCTTTCAGGCAAGCTTCTCATCAGAAGCTAGAGGGAGGTAACCTTGCGCTGGAAAGGAGTATGCATTATGGGATTGAGGTGCGGGTCATTCGCGGGATGAGGTATGAGGGAAGTGCATCGTCGTCTGGTAAGGTTTATGTTTATGATGGACTGTATAAGATTGTCGATTGCTGGTTTGATGTGGGGAAATCTGGTTTCGGAGTTTTTAAGTATAAGCTTTGGAGAATTGAAGGGCAAGAGAAGATGGGTAGTGCTATTCTTAAAGAAGCCCGGGAGATTAGGAGAAGTGGATTTGATTTCAAACCCATGTATTGTCTCTCTGTTGATATTTCAAACCGTAAGGAGAACGTCCCTGTCCGGCTTTTTAATGATATAGATGACAATCAGGATCCTCTTTACTTTGAGTATCTTACCAGGACTACGTTTCCTCAATTTGTGTTCCATCAAAGTGGAAAGGCCACTGGTTGCGATTGTGTGGACGGTTGCGCTGATGGCTGCTTTTGCTTTATGAAAAATGGAGGTGAGTTTCCATATAACCAACATGGGATTCTCGTCCGAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGCCGTTGTCCTCCTCATTGTCGGAATCGTGTTACACAAAAGGGGCTGAAGAATAGGTTGGAAGTGTTTAGGTCTAGGCAGACAGGTTGGGGAGTTAGGTCCTTGGACCTTATTCATGCTGGTGCTTTTATCTGTGAGTATGCTGGGGTTGTTTTGACTAAGGAGCAAGCACAGATTTTGACAATGAGTGGTGGTGACTCATCGATACACCCTAATCAGTTTTCTGAGAGGTGGGCAGAATGGGGGGATGTATCTCAAGTATACTCTGATTATGTCCGTCCGTCATATCCATCGGTTCCTCCTTTAGATTTTTCTCTGGATGTGTCAACTATGAGAAATGTTGCTTGCTATATGAGCCATAGTTCAACCCCAAATGTGTTTGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCTCACGCTATGGTATTTGCGATGGAGAACATCCCTCCAATGAGAGAGCTCAGCCTTGATTATGGGATAGCTGACGATTGGACAGGCAAGCTCTCTATATGTAACTGA 2172 0.4678 MDSIQTPNNNTTTFLPPPPGLHIPTTTTAAATTSYGGGVSIPNLKVPKPEPFDDSDVEKQLQLYSDFCRVSNLFREAFGNVDFPSDIDSELVDVKVSISDPNGVVDLNLPAPNSQPEEESLDFLDPDSGAIVPVPPIQEVAVTTPRRKQSRVKELVRVVDLGVKDQVHFREVVRKTRMVYESLRVLTSVEEEKRAVAAAEEEKRMMAAMAAAAAAAAAASAALADGVAAEGSGKPEGSGSNGSRTYRRLRLRGDLRAASLMRDQGLWLNRDKRIVGATPGIYVGDIFLFRMELCVLGLHGQIQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDLDDGEVIVYTGQGGQEKNSFRQASHQKLEGGNLALERSMHYGIEVRVIRGMRYEGSASSSGKVYVYDGLYKIVDCWFDVGKSGFGVFKYKLWRIEGQEKMGSAILKEAREIRRSGFDFKPMYCLSVDISNRKENVPVRLFNDIDDNQDPLYFEYLTRTTFPQFVFHQSGKATGCDCVDGCADGCFCFMKNGGEFPYNQHGILVRGKPLIFECGPFCRCPPHCRNRVTQKGLKNRLEVFRSRQTGWGVRSLDLIHAGAFICEYAGVVLTKEQAQILTMSGGDSSIHPNQFSERWAEWGDVSQVYSDYVRPSYPSVPPLDFSLDVSTMRNVACYMSHSSTPNVFVQFVLYDHNNLMFPHAMVFAMENIPPMRELSLDYGIADDWTGKLSICN 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1767 723 ProSiteProfiles SET domain profile. 566 710 IPR001214 GO:0005515
Lal16g1767 723 ProSiteProfiles Pre-SET domain profile. 505 563 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal16g1767 723 MobiDBLite consensus disorder prediction 1 20 - -
Lal16g1767 723 ProSiteProfiles YDG domain profile. 276 426 IPR003105 -
Lal16g1767 723 Pfam SET domain 577 710 IPR001214 GO:0005515
Lal16g1767 723 SMART preset_2 458 550 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal16g1767 723 SMART G9a_1 271 430 IPR003105 -
Lal16g1767 723 Pfam Pre-SET motif 461 558 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal16g1767 723 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 47 720 - -
Lal16g1767 723 Gene3D SET domain 435 723 IPR046341 -
Lal16g1767 723 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 53 723 IPR025794 GO:0016571
Lal16g1767 723 SUPERFAMILY SET domain 451 722 IPR046341 -
Lal16g1767 723 Pfam SAD/SRA domain 275 430 IPR003105 -
Lal16g1767 723 SUPERFAMILY PUA domain-like 257 439 IPR015947 -
Lal16g1767 723 Coils Coil 189 209 - -
Lal16g1767 723 Gene3D - 273 434 IPR036987 -
Lal16g1767 723 SMART set_7 566 716 IPR001214 GO:0005515
Lal16g1767 723 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 47 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1767 Lal-Chr16 16746112 16748283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1767 252 712 Su(var)3-9 homologs AT5G04940 40.377 2.14e-107 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal16g1767 SAD_SRA 1.8e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1767 K11420 - gmx:100785015 910.983