Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1760 ATGAGTTCCTTCTCCATCACAAGGAAGAAGACGCCATTCCAGAAGCACAGAGAAGAGGAGGAGGCAAAGAAGAAGAGAGAAGAAGATGAGACTGCTCGCTTATATGCCGAATTTGTGGAGTCATTTCAAGGGGATAATGCTCCTGGGTCGAAGACTTTTGTTCGCGGAGGAACAATTAATCCCAATGATAATTTGAAAGATGACTTAGATGGTGAAAAGTCCAAAGGTGGGGTATCTGGTTCAAAGAAGGGAAGTAGGTATGTACCTTCTTTTCTGCCGCCTCCATTGGCAACCAAGGGAAAGGAACCTGAAAGGAAAAAGGAGGAGGAGAAGCCAAAGGAGAAAGAGAAAGGAAAGTCAAGGAACATTGACCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGACGAAATCAAGAACGTGATCGTGATGGGCACACTGTAGACTATTCTATTTCGAGTCGCTTTGACGAACTACCAGATGACTTTGATCCCAGTGGAAAACTTCTGGGATCATTTGATGATGGTGATCCACAAACAACAAATCTGTATGTTGGAAATCTCTCACCCCAGGTTGATGAAAATTTTCTTCTCCGTACGTTTGGAAGATTTGGACCTATTGCTAGTGTAAAGATAATGTGGCCTAGGACAGAGGAGGAGCGAAGGAGGCAAAGAAACTGTGGTTTTGTAGCTTTCATGAACAGAGTTGATGGGCAGGCTGCTAAAGATGAGATGCAAGGAGTTGTGGTTTACGAATATGAACTGAAAGTTGGTTGGGGCAAATCTGTTGCCCTCCCATCGCAAGCACTACCTGCACCCCCACCAGGACACATGGCCATCAGGAGTAAGGAGGGTAATACTGTGATATTGTCTGGCCCATCAGGTCCGCCAGTAACTTCTGTGCCTAATCAGAACAGCGAACTGGTTCTTACTCCTAATGTTCCTGACATAATGGTTACACCTCCTGTGGATGAGCATCTAAGGCATGTAATTGATACATTGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTTGAGCAAGCTATTATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTTCTTGGTTCGAAGGAACATACCTACTATGTTTGGAGACTTTACTCATTTGCTCAGGGTGATACATTTCAAAGATGGCGCACTGAACCTTTTATCATGATATCGGGTAGTGGAAGATGGGTTCCGCCCTCATTGCCAACAGCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTCTCACACATGCTGGAGGAAAAAGCAGGCGTGTAGAGCCTGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTCCGTGCTTTAACATTGGAGAGAAGCCAAATAAAAGAGGCTATGGGGTTTTCTTTGGACAATGCTGATGCAGCTGGTGAGATAGTTGAGGTTTTAACTGAATCCTTGACACTTAAAGAAACCCCTATTCCAACTAAAATTGCAAGGCTTATGCTTGTGTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCTGCATATCGCACCAAGTTTGAAGCAACGTTACCTGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTAAAGGAACGAGTACTGAAAGTTTTGCAAGTATGGGCCGACTGGTTTCTGTTTTCAGATGCTTATGTGAGTGGTTTACGAGCCACTTTCCTTCGCTCTGGGAACTCTGGCGTGATACCTTTCCATTCCATATGTGGTGACACACCTGAGGTTGAGCAGAAGATCACTTCTGAGGATATAGTTATCGGTGGCAAAACCAACCCGGATGCTGCATTGGCAATCGGTCGAGGAGCAGCAACGAAGGAGCTAATGAGTCTTCCTCTTGCTGAGCTTGAAAGACGTTGCCGACACAATGGATTGTCGCTTTTTGGTGGTAGAGAAGTGATGGTTGCTCGGTTGCTAAATCTCGAAGAGGCAGAAAAGCAAAGGGGTTATGAACTAGATGGTGAATTGAAGCATGCCCAAAACCAAGCAAATTCCGGGAAATATCCGAGTAGTCGGCGAGAAACAAGTGCTGAGCCTGAAACAGTGGAATTGCCTGCTTGGAATCGCTTTGGTGATGAAGCTTTGCAGTCGCAAGGCAAAGGGTCTGTACCTTTAGTGCCAACCCTTTCTATTCCACAGCCTGAACTAAAAGCCTTCACGAAAAAGGAGAAGAGTGATCCTGTTTTGCCTGCCTCTAAATGGGCTCGGGAGGATGACGAAAGTGATGATGAGCAAAGGGGAAGTGGAAAGAATTTTGGGCTAAGTTACTCATCTTCTGGTAGTGAGAATGCAGGTGAAGGTCTTACTAAAGCTGATGAATTGGAGTCAGCTGTTGATACACGATTGTCAGCTCATGCTGACAATGGAATGAATGATGAGCAAAGGCAAAAGTTGAGACGCTTGGAGGTTGCTTTAATCGAATATCGTGAGTCTCTTGAAGAAAGAGGGATTAAAAATTTGGAAGAAATTGAAAAGAAAGTTGCAACATACCGGAAACAACTGCAAGTGGAGTATGGGCTATCAGATTCTGGTGAAGATGGTCAAGGCAAAAGAAGAACGTCTTCAGAGAGGAGGGATGTGCATGATGTCTCAAGGAAGCGGCACCGCAGCCATAGTCCAAGCAATAGCCCGCAGCAGAAATTATCAGGCAAAGTCAGAGATAGAGAACATGATTTAGAAAGGGGTCGAGACAGACATAGAGACAGAACTCATGATTTTGATAACGATAGGGGAAGGGACCGGCACCGCGAAAAGAGTGGAAGCAGAGAGAGGGAGGATCATGATAAGGAGAAAGGCAGGGAACGCGAAAGGAGAAGACGGATCAAATAA 2910 0.4491 MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNDNLKDDLDGEKSKGGVSGSKKGSRYVPSFLPPPLATKGKEPERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQERDRDGHTVDYSISSRFDELPDDFDPSGKLLGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRVDGQAAKDEMQGVVVYEYELKVGWGKSVALPSQALPAPPPGHMAIRSKEGNTVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVTPPVDEHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTFQRWRTEPFIMISGSGRWVPPSLPTAKSPEHEKESGLTHAGGKSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVSGLRATFLRSGNSGVIPFHSICGDTPEVEQKITSEDIVIGGKTNPDAALAIGRGAATKELMSLPLAELERRCRHNGLSLFGGREVMVARLLNLEEAEKQRGYELDGELKHAQNQANSGKYPSSRRETSAEPETVELPAWNRFGDEALQSQGKGSVPLVPTLSIPQPELKAFTKKEKSDPVLPASKWAREDDESDDEQRGSGKNFGLSYSSSGSENAGEGLTKADELESAVDTRLSAHADNGMNDEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVATYRKQLQVEYGLSDSGEDGQGKRRTSSERRDVHDVSRKRHRSHSPSNSPQQKLSGKVRDREHDLERGRDRHRDRTHDFDNDRGRDRHREKSGSREREDHDKEKGRERERRRRIK 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1760 969 MobiDBLite consensus disorder prediction 415 439 - -
Lal16g1760 969 MobiDBLite consensus disorder prediction 409 439 - -
Lal16g1760 969 SMART 558neu5 448 583 IPR006569 -
Lal16g1760 969 MobiDBLite consensus disorder prediction 45 59 - -
Lal16g1760 969 ProSiteProfiles SURP motif repeat profile. 333 376 IPR000061 GO:0003723|GO:0006396
Lal16g1760 969 PANTHER RNA PROCESSING PROTEIN LD23810P 5 965 - -
Lal16g1760 969 SMART cwf21_2 817 866 IPR013170 -
Lal16g1760 969 MobiDBLite consensus disorder prediction 744 823 - -
Lal16g1760 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 258 IPR000504 GO:0003723
Lal16g1760 969 MobiDBLite consensus disorder prediction 862 969 - -
Lal16g1760 969 Pfam Surp module 331 383 IPR000061 GO:0003723|GO:0006396
Lal16g1760 969 Gene3D - 817 868 - -
Lal16g1760 969 SMART surpneu2 331 385 IPR000061 GO:0003723|GO:0006396
Lal16g1760 969 Pfam cwf21 domain 819 862 IPR013170 -
Lal16g1760 969 Coils Coil 818 838 - -
Lal16g1760 969 Gene3D - 441 588 IPR008942 -
Lal16g1760 969 ProSiteProfiles SAP motif profile. 635 669 IPR003034 -
Lal16g1760 969 SUPERFAMILY ENTH/VHS domain 445 582 IPR008942 -
Lal16g1760 969 MobiDBLite consensus disorder prediction 744 774 - -
Lal16g1760 969 SUPERFAMILY Surp module (SWAP domain) 307 389 IPR035967 GO:0003723|GO:0006396
Lal16g1760 969 MobiDBLite consensus disorder prediction 775 792 - -
Lal16g1760 969 MobiDBLite consensus disorder prediction 1 125 - -
Lal16g1760 969 Coils Coil 17 37 - -
Lal16g1760 969 Gene3D - 97 267 IPR012677 -
Lal16g1760 969 CDD RRM_SR140 183 266 IPR035009 -
Lal16g1760 969 MobiDBLite consensus disorder prediction 681 713 - -
Lal16g1760 969 SUPERFAMILY RNA-binding domain, RBD 178 272 IPR035979 GO:0003676
Lal16g1760 969 MobiDBLite consensus disorder prediction 65 79 - -
Lal16g1760 969 MobiDBLite consensus disorder prediction 685 699 - -
Lal16g1760 969 Coils Coil 446 466 - -
Lal16g1760 969 PANTHER - 5 965 - -
Lal16g1760 969 MobiDBLite consensus disorder prediction 99 125 - -
Lal16g1760 969 MobiDBLite consensus disorder prediction 795 823 - -
Lal16g1760 969 Pfam CID domain 448 575 IPR006569 -
Lal16g1760 969 MobiDBLite consensus disorder prediction 871 890 - -
Lal16g1760 969 MobiDBLite consensus disorder prediction 11 35 - -
Lal16g1760 969 Gene3D Surp module 319 388 IPR035967 GO:0003723|GO:0006396
Lal16g1760 969 SMART rrm1_1 185 261 IPR000504 GO:0003723
Lal16g1760 969 ProSiteProfiles CID domain profile. 441 586 IPR006569 -
Lal16g1760 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 265 IPR000504 GO:0003723
Lal16g1760 969 MobiDBLite consensus disorder prediction 909 962 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1760 Lal-Chr16 16631573 16645276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1760 181 261 Eukaryotic Initiation Factors Gene Family AT1G71770 33.333 3.00e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1760 K12842 - gmx:100776093 1583.16