Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1752 ATGGTGGCAATGACGGAGACGACCACCAGAATCAATGGCGGAGGCGAACACCAGAATCAATGGCGGAGGCGACCACCGGAATCGTTGGTTTTTATTGGCGATAATAAGGAGGAGAGAAAGGGAGGAGATAGGTTTTTGAGACCCATTTTGCTTCTTATTCCGAATTCGAAATCGAAATCTCACAGCTGGGCTTCACAAGAAATGGATCCTGCTGGTCGCTATGGTCCACGTCAAGGCTGGGATAATAACAACAGCGCTCTTGAGGGTTATGCTGAGGTCCGTGAGCCAAATTTTCGGGTTGGAGGATCTTATGATGAAAGTCGGTTTATAGATGAAAGGTATCCAAGGGATGGCACATACCAGAGAAATAATTTCCATCGCGACATTTTGGATGGGGAATCCTATCTGCCACCAGGATCTGCTGCTGGACACTGGAGCCAGTCCAAACGAAGAGGTTATGATGAAGATTATCCACTCGACAAGGAACCCAGACGTTTTCAGAGGCCGTATCGTGAATCATATAATCAGGTTAATGCTTTCAGGGACCATGAGATTGAGACCTACCCACAATATGATAAGTTTCATGATGGCTATTCTAGCATTGATAACTATGGTGATCGAGGATATGATAAACCTGACAGGTTTGCAGGACATGACGACAATGATTATGAGTATGATGATTATGGCTACAAGTCCCGCCTTTTTCATCATCACAGGGAGGATAGCCATGACAGGGATTATGATCATGGTCGTCATAGTTATGATTCTGATTACGAAGGAGGTAGTAGAAGAGATAATAATCAGAGGCGGCGCGAATCCCGTGATCGTGAACATGAGAGTAGAGATCTTAGTCGGGAAAGGGATTTGAGTCCACATCGGAGGCATGAGCGTTCTCGTTCCCGCTCTCGATCACGATCCCTATCCAATTCCTGTTCCCGTTCCCATTCCCTTTCTCGTTCCCATTCCCATTCCCAATCTTGTGGATATGATTATGATAATCATCCAAGATCAAAGTCCCCTCGAGGGCGAAGCCATGGCCGAAGTTATCGAGAAGACAGCTATGTTGACAGTCGATATGATAGAAGTGAAAGACGTAGGGATCGTGAGGACAAGCATCAGCGTGAACATTATTCTGTGGCTCCATCTCCAACTATTGTTGTGAAGGGTCTTTCACAGAAGACGACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCCCTTCGTCATGTTCGCATTATAAAGGAGAGAAATTCTGGCATCTCTAGAGGATTTGCATTTATCGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGAAAAACTAGGAGATGATGGTCTTGTCGTGGATGGGAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGCTCCAGGTCCTGATGGAGCTATTAAATCTGGTCATAATCATAAGATGATTACAATACCATCTGATTGGATGTGCACTATATGTGGCTACATCAATTTTGCACGCCGGAGTTCATGCTATCAGTGTAATGAGCCTCGAACTGAGGATGCTCCTGCAGCAGATATTTCATCATCAAATTCAACATTCTTAGGAAGGAAAGGTTTGGAGGCAGGTCCAACTCATGTTTTGGTTGTCCGTGGACTGGATGAAAATGCCGATGAGGAGATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGGGACAAGTTTACTCATGTGTCAAGGGGATTTGCATTTGTGCACTTTCATTCGGTGGAGGATGCTACAAAAGCTCTTGAGGCAACAAATGGAACAACCCTTGAGAAGAATGGGCAAATTCTAAGAGTAGCATATGCAAAAAGTATCCTGGGCCCTGGATCAGGAGCTTCCCAATCGAGCAGTCTTGCAGCTGCTGCTATCGAGGCTGCAACATTTGCTCAACAGTATGATACTGTGGGATGGGCTCCAAAAGAATATAATCCAGATGACAAACAATTTGCTGGTCCAGAGCAAACTGGCACAGTAATTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTACGATGCTGCTTCTGGGTTTTACTATGATGGGAATACTGGTCTGTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAGCCAAACCCAGCAGTACATCCCTTGCACTGACCAAAATCAGAATAAAACAGATAATAACCTGTCTGAACCTTCCAAAGCATCTGATGGTTCCAGCAGTAAAAAAGTGGTGATTTCTGCACCAGCAATTACCGTTGCATCAGTTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCAGCGGTAGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAAAGCAAAGGAGATAAAGCTTGCCTCAAAAAGCAGTATTCTGGCGAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGGCAGACTGCTCGAGTGGCTCTGGAAGATAATCAGCTCTCTATTTCAGCTGATGATAAACATTCTTCAGGACATTCTGTAAAGAACAAGTTAAAAAATGAGACTGCGGCAAGGGAAAGTAATGCATCTACTATGGGAGTTCACACAAGTGTTAACCAGGCCATTGCTTTGGATCCTCAGCCACAGCCCCGACCAGTTAGTAATAGCCTTGGGGGCACTCTGATGGGGGTTATAAGAGGCTCAGGAAGAGGGGTTGTTAAATCAGATACTTCTTATTCGGGTTCTGCAGCTGCCACATCATCTGTGTCAAGTTCATTTTCAGCAAATGTTGATGCACAAACAATTTCTACTCCCTTCAAAACAGATGTATCTGCCTTGAGTTCACATTCACCATCTGTGGCTTCTGTAAGTGGCAGACGAAGGTTTTCAGAAATGCCCCATTCTGCTTCAACTCACAAGGAACAATCTCAAACACCCTACAGGGATCGTGCAGCTGAGAGGAGAAGTTTGTATGGCTCGTCATCTTCAGTTAGGAATGATTTTTCTGACCTTGATATTGGGGATTCAAATCGAGAATTTGCATCAAGGAAGGGTGATCCGATGCCTTTCCCTCCTGGGGTTGGTGGAGGACGAGTGGTTGGAGATGTCAACCTTGATACATTTGAGGTGATTACGGCAGACAAAGCAATTGATGAAAGCAATGTTGGCAATCGGATGCTTCGCAACATGGGATGGCAGGAAGGATTGGGACTTGGAAAGGATGGAAGTGGAATGGTAGAGCCTGTGCAGGCACAAGCCATGGAGAATAGAGCAGGACTTGGGAGTCAGCACAAGAAGTTGGATCCTAGCCTTGAGGTGCAAGCAGGGGATAGTTACAAAATGCTTATTCATAAAAAAGCACTTGCTAGATTTAAGGAAATGTAA 3402 0.4489 MVAMTETTTRINGGGEHQNQWRRRPPESLVFIGDNKEERKGGDRFLRPILLLIPNSKSKSHSWASQEMDPAGRYGPRQGWDNNNSALEGYAEVREPNFRVGGSYDESRFIDERYPRDGTYQRNNFHRDILDGESYLPPGSAAGHWSQSKRRGYDEDYPLDKEPRRFQRPYRESYNQVNAFRDHEIETYPQYDKFHDGYSSIDNYGDRGYDKPDRFAGHDDNDYEYDDYGYKSRLFHHHREDSHDRDYDHGRHSYDSDYEGGSRRDNNQRRRESRDREHESRDLSRERDLSPHRRHERSRSRSRSRSLSNSCSRSHSLSRSHSHSQSCGYDYDNHPRSKSPRGRSHGRSYREDSYVDSRYDRSERRRDREDKHQREHYSVAPSPTIVVKGLSQKTTEEDLYQILAEWGPLRHVRIIKERNSGISRGFAFIDFPSVGAAQGMMEKLGDDGLVVDGRKLFFEYSSKPTGAPGPDGAIKSGHNHKMITIPSDWMCTICGYINFARRSSCYQCNEPRTEDAPAADISSSNSTFLGRKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGASQSSSLAAAAIEAATFAQQYDTVGWAPKEYNPDDKQFAGPEQTGTVIGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDSQTQQYIPCTDQNQNKTDNNLSEPSKASDGSSSKKVVISAPAITVASVEKPASLADAVQAAAVAALAAEKKEKEKAKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQTARVALEDNQLSISADDKHSSGHSVKNKLKNETAARESNASTMGVHTSVNQAIALDPQPQPRPVSNSLGGTLMGVIRGSGRGVVKSDTSYSGSAAATSSVSSSFSANVDAQTISTPFKTDVSALSSHSPSVASVSGRRRFSEMPHSASTHKEQSQTPYRDRAAERRSLYGSSSSVRNDFSDLDIGDSNREFASRKGDPMPFPPGVGGGRVVGDVNLDTFEVITADKAIDESNVGNRMLRNMGWQEGLGLGKDGSGMVEPVQAQAMENRAGLGSQHKKLDPSLEVQAGDSYKMLIHKKALARFKEM 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1752 1133 MobiDBLite consensus disorder prediction 240 381 - -
Lal16g1752 1133 MobiDBLite consensus disorder prediction 148 169 - -
Lal16g1752 1133 Gene3D - 483 515 - -
Lal16g1752 1133 ProSiteProfiles G-patch domain profile. 1058 1104 IPR000467 GO:0003676
Lal16g1752 1133 SUPERFAMILY Ran binding protein zinc finger-like 479 515 IPR036443 -
Lal16g1752 1133 SUPERFAMILY RNA-binding domain, RBD 373 466 IPR035979 GO:0003676
Lal16g1752 1133 Gene3D - 318 467 IPR012677 -
Lal16g1752 1133 Pfam G-patch domain 1059 1100 IPR000467 GO:0003676
Lal16g1752 1133 MobiDBLite consensus disorder prediction 1 23 - -
Lal16g1752 1133 MobiDBLite consensus disorder prediction 947 1030 - -
Lal16g1752 1133 MobiDBLite consensus disorder prediction 995 1009 - -
Lal16g1752 1133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 383 463 IPR000504 GO:0003723
Lal16g1752 1133 MobiDBLite consensus disorder prediction 947 963 - -
Lal16g1752 1133 Gene3D - 524 643 IPR012677 -
Lal16g1752 1133 CDD RRM1_RRM2_RBM5_like 381 461 - -
Lal16g1752 1133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 385 444 IPR000504 GO:0003723
Lal16g1752 1133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 542 608 IPR000504 GO:0003723
Lal16g1752 1133 MobiDBLite consensus disorder prediction 304 332 - -
Lal16g1752 1133 MobiDBLite consensus disorder prediction 60 80 - -
Lal16g1752 1133 MobiDBLite consensus disorder prediction 729 752 - -
Lal16g1752 1133 MobiDBLite consensus disorder prediction 138 172 - -
Lal16g1752 1133 SUPERFAMILY RNA-binding domain, RBD 538 623 IPR035979 GO:0003676
Lal16g1752 1133 SMART G-patch_5 1056 1102 IPR000467 GO:0003676
Lal16g1752 1133 MobiDBLite consensus disorder prediction 240 295 - -
Lal16g1752 1133 CDD OCRE_SUA_like 676 728 IPR035623 -
Lal16g1752 1133 MobiDBLite consensus disorder prediction 1 16 - -
Lal16g1752 1133 SMART zf_4 487 511 IPR001876 -
Lal16g1752 1133 MobiDBLite consensus disorder prediction 334 377 - -
Lal16g1752 1133 Pfam OCRE domain 679 727 IPR041591 -
Lal16g1752 1133 ProSiteProfiles Zinc finger RanBP2 type profile. 485 514 IPR001876 -
Lal16g1752 1133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 540 620 IPR000504 GO:0003723
Lal16g1752 1133 MobiDBLite consensus disorder prediction 847 861 - -
Lal16g1752 1133 ProSitePatterns Zinc finger RanBP2-type signature. 489 508 IPR001876 -
Lal16g1752 1133 MobiDBLite consensus disorder prediction 841 871 - -
Lal16g1752 1133 SMART rrm1_1 541 616 IPR000504 GO:0003723
Lal16g1752 1133 SMART rrm1_1 384 459 IPR000504 GO:0003723
Lal16g1752 1133 MobiDBLite consensus disorder prediction 912 934 - -
Lal16g1752 1133 PANTHER FI21118P1 108 1133 - -
Lal16g1752 1133 CDD RRM1_RRM2_RBM5_like 538 618 - -
Lal16g1752 1133 PANTHER RNA-BINDING PROTEIN 108 1133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1752 Lal-Chr16 16560930 16570204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1752 382 604 Eukaryotic Initiation Factors Gene Family AT2G36660 25.600 1.55e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1752 K13094 - gmx:100787998 1528.84