Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1744 ATGAATCTTCCGCCGCCAATGTCGACGGCGTTCACGGCGGTGCAGTGGCAGGAGTTGGAGCACCAAGCTCTTATCTTCTCCTACTTCACGGCCGGTATAACCGTCCCCCCTCACCTTCTCCGTCACCCATCTCTTGGTTATTATTCCTATGATGTGAAGAAAATTGACCTGGAACCAGGCCGGTGTAGGAGGACGGATGGGAAGAAGTGGCGGTGCTCGAGGGATGCTCACCCGAACTCCAAGTACTGCGAGCGCCACATGATTCGCCGCCGCTATAGTTCAAGAAAGCTTGTGGAATCATCACAATCTATTGCTGCTGCTGCTGCTGCTCTTCATTCGAAGTCGGTGGAAGGGGTTTTAGCCTCGGGGAGCAGAGGTGACAGTGGAAATGGAACCTTTCAGAGCCTGCCCTTGCACACAAGTGGATCCTGTGAGGGTTTCACGCTTGGAAACAATAATCGCTTTTGCCAGCTTCAAATGGAACCCTTTCCCAGTGACTTGGTTAGCAAGAAAGAGTACAGTGATAGATGTGGAGTCCTTTGGTCTAGAGCTTTGAACAATGGGTTTGTTAAGGGGTTTGTTTCTTTTTTGGGTGGTCAGATTATGCTTATTCAGTCTTCTCTAACTAGTATCCCTTTGTATCTCCTTTCCTTCTTTCGCATTCCTGTGGCAGTTGCCCAGAAAATTGAGAAAATTTTGAGCACTTTCTTTGGTGAGGAGTGGATACTTCTAGTGTTCGAGAACAAGGCATTGACTGCTAAGGCTGTGTTTAGGAGTCTTGTTTTGGAGAGGGAGGGAAGGAAAGATATGGTTTCGGGAAGTGTCTGCCTTGTTCGGGAGTTGGGTCAAAGAGAGTTAAAGTTTTTGAAGTTCTGTTCTTGGGTTTGTAACATTTTCAGTTCTGTTCTTAGGTTCGGGCCGAACTTTGAAGCAGATGGGCATAACTACATAACTAAAGATCTAGGAACTGCTAGATATGAAGGTAACTTTACCTCAGATGGCATATGGTCTCACATGTCCCAAGTTTCCTCGAACTCTGTCTCGGAATCAAGAAACAGTTCTACTGTGATCAACAACTACTTCCAGCAGCAAACACTGCGAGATACCAACCCTTTGAACATTGCTGCTATGCATTCCGAGCAACATGTCTCTATTGGGCATCTAAGTTCAGCAGGGTGTATGAAACAAGAATATCAGCCTCCTCCTTCCCTCTACTGGAAGAAGGGTCAAGGCTCCCCTGCCGCTGAATATAGACCCGGCATAGATTTTAACTGCAACCCTGATGTGAATGTTGATCGCGGCGGTTCTCTTTATAAGTAG 1320 0.4705 MNLPPPMSTAFTAVQWQELEHQALIFSYFTAGITVPPHLLRHPSLGYYSYDVKKIDLEPGRCRRTDGKKWRCSRDAHPNSKYCERHMIRRRYSSRKLVESSQSIAAAAAALHSKSVEGVLASGSRGDSGNGTFQSLPLHTSGSCEGFTLGNNNRFCQLQMEPFPSDLVSKKEYSDRCGVLWSRALNNGFVKGFVSFLGGQIMLIQSSLTSIPLYLLSFFRIPVAVAQKIEKILSTFFGEEWILLVFENKALTAKAVFRSLVLEREGRKDMVSGSVCLVRELGQRELKFLKFCSWVCNIFSSVLRFGPNFEADGHNYITKDLGTARYEGNFTSDGIWSHMSQVSSNSVSESRNSSTVINNYFQQQTLRDTNPLNIAAMHSEQHVSIGHLSSAGCMKQEYQPPPSLYWKKGQGSPAAEYRPGIDFNCNPDVNVDRGGSLYK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1744 439 ProSiteProfiles QLQ domain profile. 10 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lal16g1744 439 PANTHER - 5 177 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lal16g1744 439 PANTHER - 302 432 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lal16g1744 439 SMART QLQ_2 9 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lal16g1744 439 ProSiteProfiles WRC domain profile. 56 100 IPR014977 -
Lal16g1744 439 Pfam QLQ 10 40 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lal16g1744 439 Pfam WRC 58 99 IPR014977 -
Lal16g1744 439 PANTHER GROWTH-REGULATING FACTOR 5 177 - -
Lal16g1744 439 PANTHER GROWTH-REGULATING FACTOR 302 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1744 Lal-Chr16 16445971 16450950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1744 11 102 GRF Transcription Factor Family AT3G13960 51.351 4.07e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lal16g1744 WRC 3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1744 - - gmx:100777524 174.481