LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal16g1741	ATGGATTTATCAACCACCGGCGGCAACGGCAGCGGCGGCGCAAATTCACCATCGCCGTCTCCGATTCTAAGCGCGAACGCGCCGCCACCATTCCTGAGCAAGACTTACGATATGGTAGATGATCCTTCAACCGATTCGATAGTGTCATGGGGTCCAACAAATAACAGCTTCATTGTTTGGAATCCACCGGAATTTGCGAGAGATCTTTTGCCTAAGCATTTCAAGCATAACAATTTCTCAAGCTTTGTTCGTCAATTGAACACTTATGGTTTCAGGAAGGTAGATCCTGATCGTTGGGAATTTGCAAATGAGGGATTTTTAAGGGGTCAGAAGCACTTGCTTAAGAGTATAACTCGGCGGAAACCTGCCCATGGTCATAATCAGGCACAACAATCACATGGACAGAGCTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTTAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAAGTTGAGGCAGCAACAACAGACTACTGAAAGTCAGATACAGACAATGGTTCAGCGCTTTCAGGTAATGGAGCAACGACAGCAGCAGATGATGTCATTCCTTGCAAAGGCTGTCCAGAGCCCAGGGTTCTTTGCTCAATTCATAAAACAGCAAAACGAGAGTAATAGGCGTATAACTGACACAAACAAAAAACGTCGGCTCAAACAGGACGGTATTGCTGAAATGGAACATTCTGCTGATTCTGATGGCCAGATTGTTAAATATCAACCTCAGATAAATGAAGCAGCAAAAGCAATGATAATGCAGATCCTGAAATTGGGTACTTCTAACCTTAGTAACCCTGATAGTTACTTGATTGGTGATGGTTCATCATCATCCAATGCCATGGACAGGGGAAACTCTTTAAGTCGGACTTCTGGAGTAACTCTTCAAGAGGTCCCTCCAGCTACAGTGCAATCTTCTCACATTCCAGCTGCAATAGGGACTCAAGAGCATGCCCCCTCAAAAGGAAAATATGAGTGTCTATCTTCTCCTCAAGTTACAGCCTGTGGAAATGGTATAAAAGCTCAATACCCTGAAATAAATGTTTTGGTTGGAGCACCCGAGGTTCCCTCTATCCCTGTTTCTCAAGTAGATGCAATCATGCCGGACATTTCTCCAATACCAGATACAGTGACAGGAAGTATTCTTGATACTCCTCAAGAAAATTATATGGCATCTGAGACAAACGGTGTGGGATATATGGATTCCTCTTCACTAGGAGTTAACGGGTCATTCCCCATTGATTTTGATAGTATATCATCTGAAACTGACATTGATGATCTGTTTAGCAACCCTGCATTTTGGGCTGATATTGTGCAAACTCCAGTGGCAGAGGATATTGATACCGACATTGCTGAATTACTCAAGGACAATCAGCTGCAGCCGATAGAAAATGGATGGGAGAAATCTCAACATATGGATCGACTTACAGAGAAAATGGGCAATCTTTCTTCCGATACAAAACGAATATTAGGCATGAACATTGCAATGTTTAACATGAAATCTGCATATGGAAGAAGAGGTACAAATTAA	1581	0.4301	MDLSTTGGNGSGGANSPSPSPILSANAPPPFLSKTYDMVDDPSTDSIVSWGPTNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGHNQAQQSHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVKLRQQQQTTESQIQTMVQRFQVMEQRQQQMMSFLAKAVQSPGFFAQFIKQQNESNRRITDTNKKRRLKQDGIAEMEHSADSDGQIVKYQPQINEAAKAMIMQILKLGTSNLSNPDSYLIGDGSSSSNAMDRGNSLSRTSGVTLQEVPPATVQSSHIPAAIGTQEHAPSKGKYECLSSPQVTACGNGIKAQYPEINVLVGAPEVPSIPVSQVDAIMPDISPIPDTVTGSILDTPQENYMASETNGVGYMDSSSLGVNGSFPIDFDSISSETDIDDLFSNPAFWADIVQTPVAEDIDTDIAELLKDNQLQPIENGWEKSQHMDRLTEKMGNLSSDTKRILGMNIAMFNMKSAYGRRGTN	526

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal16g1741	526	Gene3D	-	24	121	IPR036388	-
	Lal16g1741	526	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	11	492	IPR027725	-
	Lal16g1741	526	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lal16g1741	526	MobiDBLite	consensus disorder prediction	1	27	-	-
	Lal16g1741	526	PRINTS	Heat shock factor (HSF) domain signature	31	54	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal16g1741	526	PRINTS	Heat shock factor (HSF) domain signature	69	81	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal16g1741	526	PRINTS	Heat shock factor (HSF) domain signature	82	94	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal16g1741	526	SUPERFAMILY	"Winged helix" DNA-binding domain	26	120	IPR036390	-
	Lal16g1741	526	Coils	Coil	147	181	-	-
	Lal16g1741	526	ProSitePatterns	HSF-type DNA-binding domain signature.	70	94	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal16g1741	526	SMART	hsfneu3	27	120	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal16g1741	526	Pfam	HSF-type DNA-binding	31	120	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal16g1741	526	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-1	11	492	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal16g1741	Lal-Chr16	16390503	16394540	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal16g1741	3	503	HSF	AT1G32330	51.556	1.29e-164	474

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lal16g1741		HSF_DNA-bind	1.5e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal16g1741	K09419		-	gmx:732544	739.954