Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1717 TTGGTGATTGATAATGGCATCATTTCTGTCACATTGTCAAACCCTGAAGGCTACGTGACTGGAATATCATATAATGGAATTCATAATATCCTTGAAGCTGAAAATGAAAAACAAAATAGAGGGTACTTGGACGTTGTTTGGAATGATCCCGGAAAACCTTATTCCTTCCAGAGAATCCATGGGACAAAGTTTTCGATAATAACAGCTGAAGAGAATCTGGTTGAGGTTTCATTTTTAAGAACATGGGAATCTTCCATGAATGGCACAAATGTCCCCATAAATATAGATATAAGGTATATTTTTCGGAGTGGTAACTCTGGATTTTATTCATATGCGATATTTGATCGTCCAAAAGGGTTGTCAGCAACAGAGGTTGTTCAAATTAAGATTGTTTACAAGCTCGAGAAAAGGTTCAACTACATGGCTATAGAAGATAACATGCAAAAAAGAATGCCTACAATGAGAGATAGAAACAAAAGTCAACCCTTGGATTATCCTGAAGCAGTTCTATTAACCAATGCAGGTGATCCACAATTTAGAGGAGAAGTTGATGACAAATATCAATACTCAATTGAAAACAAAGACAACAAAGTACATGGATGGATTAGTGTTGATTCTGATTCACCAGTGAGTTTTTGGATGATAACACCAAGTAATGAGTTCAGGAATGGTGGACCTAACAAGCTAGACCTCACTTCTCATACAGATCCCATTACCCTAAATATGTTTGTGAGTACCCACTATGCTGGCCAAGAAGTAGTCATGTCATTTAAAGAAGGGGAGACATATAAAAAAGTTTTTGGTCCTGCTTTTGTTTATCTTAACTCAGCAAAAACTAAAGATGATTCACTCTCCCTCTGGTACATCAATGGAGGTAGATTGCAGGATGCTAACAATGCTTATGTTGGTCTTGCTTTGCCTGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGCTATCAATTTTGGACTAGAACTGATCGAAAGGGACATTTCAAAATAGAAAATATTATACCCGGAGTTTATAATTTATATGCATGGGTTTCTGGCTTCATTGGTGATTACAAATACAATACTACAATCCTCATTACACAAGGAGGAGTCTTGAATTTGAATAAATTAATTTATAATCCTCCAAGAAATGGACCAACTCTTTGGGAAATTGGGATACCAGATCGCTCATCTGTTGAATTTTATGTGCCAAATCCTTATCCTACTCTCTTGAACAAATTATACAATGACCAACCTAAAGAGAAGTTTAGGCAATACGGGCTATGGGGTCGTTATACTGATTTATATCCAAATAATGATCTAGTATATAGTGTTGGTGTTAACAAGTTTAATAAGGATTGGTTTTTTGCCCATGTTACCCGAAACGTAGGAAATAATACATATGAGCCAAGTACATGGCAGATTATATTTGAACATGAGCATGACATTTTCAGTGGAAACTACACACTACAATTGGCATTGGCATCTGCTAAAGATTCTGAGTTACAGGTTCGGTTCAATAACCCTAGCATCAACCCACCACACTTTACAACAGGACTAATAGGTGGAGATAATTCTATTTCAAGGCATGGCACACATGGATTATATTGGTTATATAACATTAATGTTTCAAGTGATCATTTTATGAAAGGAAAGAACATTATCTATGTAACGACCTAA 1671 0.3633 MVIDNGIISVTLSNPEGYVTGISYNGIHNILEAENEKQNRGYLDVVWNDPGKPYSFQRIHGTKFSIITAEENLVEVSFLRTWESSMNGTNVPINIDIRYIFRSGNSGFYSYAIFDRPKGLSATEVVQIKIVYKLEKRFNYMAIEDNMQKRMPTMRDRNKSQPLDYPEAVLLTNAGDPQFRGEVDDKYQYSIENKDNKVHGWISVDSDSPVSFWMITPSNEFRNGGPNKLDLTSHTDPITLNMFVSTHYAGQEVVMSFKEGETYKKVFGPAFVYLNSAKTKDDSLSLWYINGGRLQDANNAYVGLALPGDAGSWQRESKGYQFWTRTDRKGHFKIENIIPGVYNLYAWVSGFIGDYKYNTTILITQGGVLNLNKLIYNPPRNGPTLWEIGIPDRSSVEFYVPNPYPTLLNKLYNDQPKEKFRQYGLWGRYTDLYPNNDLVYSVGVNKFNKDWFFAHVTRNVGNNTYEPSTWQIIFEHEHDIFSGNYTLQLALASAKDSELQVRFNNPSINPPHFTTGLIGGDNSISRHGTHGLYWLYNINVSSDHFMKGKNIIYVTT 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1717 556 Gene3D - 295 373 - -
Lal16g1717 556 SUPERFAMILY Galactose-binding domain-like 381 555 IPR008979 -
Lal16g1717 556 SUPERFAMILY Galactose mutarotase-like 162 288 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lal16g1717 556 Pfam Polysaccharide lyase family 4, domain III 384 555 IPR029411 -
Lal16g1717 556 Pfam Rhamnogalacturonate lyase family 2 183 IPR010325 -
Lal16g1717 556 SUPERFAMILY Starch-binding domain-like 293 373 IPR013784 GO:0030246
Lal16g1717 556 CDD RGL4_M 289 374 IPR029413 -
Lal16g1717 556 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 292 555 - -
Lal16g1717 556 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 287 - -
Lal16g1717 556 Gene3D - 1 294 IPR014718 GO:0030246
Lal16g1717 556 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 292 555 - -
Lal16g1717 556 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 287 - -
Lal16g1717 556 Gene3D - 382 556 - -
Lal16g1717 556 Pfam Polysaccharide lyase family 4, domain II 298 367 IPR029413 -
Lal16g1717 556 CDD RGL4_N 1 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1717 Lal-Chr16 16147165 16153796 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1717 1 555 Polysaccharide Lyase AT1G09890 51.667 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1717 K18195 - gmx:100791732 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0482 16 3012810 3028021 Lal16g1717 16 16147165 16153796 PCT
Lal23g1092 23 12559834 12567000 Lal16g1717 16 16147165 16153796 PCT
Lal16g1717 16 16147165 16153796 Lal16g0482 16 3012810 3028021 PCT
Lal16g1717 16 16147165 16153796 Lal23g1092 23 12559834 12567000 PCT