Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1713 ATGCTTTTGAATTTATGGGTACCCATGAATCCGCTGGGTACTCAAGACCTGCTGGTAGTATACCCAACTGGTATTAGCACGGGTCTGGGGAGAGATTTGAGGGAAAACAATAGCAAGGAAGCATCACTTCATAATTATGCAGTGAAGCTGAATAATGAAAGCAATCATAAGTTGGTGGTTGATAATGGCATAATTTCTGTCACATTATCAAACCCTGAAGGCTACGTGACTGGAATATCATATAATGGAATCCATAATATACTTGAAGTTGAAAATCTAGAAAAAGATAGAGGGTACTTCAGCCTTGTTTGGAATGAACCGGGAAAACCTAGTACCTTTCAGAGCGTCAATGGGACAAAATTTTCGGTAATAACAGCTGAGGAGAATCTGGTTGAGGTTTCATTTTTAAGAACATGGGAATCTTCCATGAATGGCACAAATGTCCCCATAAATATAGATATAAGGTACATTTTTCGAGGAGGTGATTCTGGATATTATTCATATGTAATATTTGATCGCCCGAGTGGATGGCCAACAATAGAGGTTGATCAAATTAGAATGGTTTTCAGGCTCCAAAGAAATAGTTTCAACTACATGGCTATAGATGATAAGAAGCAAAGAAGAATGCCAACAAAGAGTGATAGAGGAAGAGGCCAAATTCTGGCATACCCTGAAGCAGTTCTATTAACCAATCCAAGTGACCCACAATTTAGAGGAGAGGTTGATGACAAATACCAATACGCAATTGAGAACAAAGACAACAAAGTACATGGATGGATTAGTGCTGATTCTAATTCACCAATAGGTTTCTGGATGATAACACCAAGTAATGAGTTCAGGAATGGTGGACCCCACAAGCTAGATCTCACTTCTCATGTGGGTCCCATCACCCTAAGTACATTTATGAGCACCCACTATGCTGGGAAGGAAGTAACCATGTCATTTGAAGAAGGGGAAACCTATAAAAAGGTTTTTGGTCCTGTTTTTATTTATCTTAACTCAGCAACAACTAAAGATAATTCACTTTCACTTTGGTCAGATGCTGTGGAGCAGCTATCCAAGGAAGTCAAAAGTTGGCCTTATGATTTTCCTAAATCACAAGATTTCGTTAAACCCAATGAAAGAGGAAAAGTATTGGGAAGATTACTAATCCAAGATAGGTACATCAATGGAGGTAGATTGCAGGATGCTAACAATGCTTATGTTGGTCTTGCTTTGCCTGGAAATGCAGGATCATGGCAGAGAGAAAGCAAGGGCTATCAATTCTGGACTAGAACTGATAAAAAAGGACATTTCGAAATAAAAAATGTTGTACCTGGAATTTATAATTTGTATGCATGGGTTCCTGGCTTTATTGGTGATTACAAATACAATACTACAATCTTCATTACACAAGGAGGAGTCTTGCATTTGAAAAAATTGTTTTACAGTCCTCCAAGAAATGGACCAACTCTTTGGGAAATTGGGATCCCAGATCGGTCATCTCTTGAATTCTATGTGCCAGATCCCTATCCTACTCTCATGAACAAATTATACAATGATCAACCTAAAGAGAAGTTTAGGCAATATGGACTATGGGATCGTTATGTTGATTTATATCCGAATAATGATCTAGTATATAGTGTTGGTGTTAACAAGTTTAATAAGGATTGGTTTTTTGCTCATGTTACAAGAAACATAGGAAATAATACATATGAGCCAAGTACATGGCAGATTATATTTGAACATGAACATGACATTTTCAGTGGAAACTACACACTACAATTGGCCTTGGCATCTGCTAAAGATTCTGAGCTACAGGTTAGGTTCAATGACCCTAGCATCAATCCACCACACTTTACAACAGGGCAAATAGGTGAAGATAATTCCATTGCAAGGCATGGCATGCATGGATTATATTGGTTATATAGCATTAATGTTCCAAGTGATCATTTTGTGAAAGGAAAGAACATTATCTATCTGACACAGATAAGAGCCACAACACCCTTTCAAGGAGTTATGTATGACTATATTCGTTTAGAAAGACCTCACACTTAA 2037 0.3775 MLLNLWVPMNPLGTQDLLVVYPTGISTGLGRDLRENNSKEASLHNYAVKLNNESNHKLVVDNGIISVTLSNPEGYVTGISYNGIHNILEVENLEKDRGYFSLVWNEPGKPSTFQSVNGTKFSVITAEENLVEVSFLRTWESSMNGTNVPINIDIRYIFRGGDSGYYSYVIFDRPSGWPTIEVDQIRMVFRLQRNSFNYMAIDDKKQRRMPTKSDRGRGQILAYPEAVLLTNPSDPQFRGEVDDKYQYAIENKDNKVHGWISADSNSPIGFWMITPSNEFRNGGPHKLDLTSHVGPITLSTFMSTHYAGKEVTMSFEEGETYKKVFGPVFIYLNSATTKDNSLSLWSDAVEQLSKEVKSWPYDFPKSQDFVKPNERGKVLGRLLIQDRYINGGRLQDANNAYVGLALPGNAGSWQRESKGYQFWTRTDKKGHFEIKNVVPGIYNLYAWVPGFIGDYKYNTTIFITQGGVLHLKKLFYSPPRNGPTLWEIGIPDRSSLEFYVPDPYPTLMNKLYNDQPKEKFRQYGLWDRYVDLYPNNDLVYSVGVNKFNKDWFFAHVTRNIGNNTYEPSTWQIIFEHEHDIFSGNYTLQLALASAKDSELQVRFNDPSINPPHFTTGQIGEDNSIARHGMHGLYWLYSINVPSDHFVKGKNIIYLTQIRATTPFQGVMYDYIRLERPHT 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1713 678 SUPERFAMILY Galactose mutarotase-like 53 340 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lal16g1713 678 CDD RGL4_C 486 674 - -
Lal16g1713 678 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 677 - -
Lal16g1713 678 CDD RGL4_N 53 341 - -
Lal16g1713 678 Pfam Rhamnogalacturonate lyase family 43 241 IPR010325 -
Lal16g1713 678 CDD RGL4_M 374 474 IPR029413 -
Lal16g1713 678 Pfam Polysaccharide lyase family 4, domain II 398 467 IPR029413 -
Lal16g1713 678 Gene3D - 482 674 - -
Lal16g1713 678 SUPERFAMILY Starch-binding domain-like 391 471 IPR013784 GO:0030246
Lal16g1713 678 Gene3D - 370 471 - -
Lal16g1713 678 Pfam Polysaccharide lyase family 4, domain III 484 673 IPR029411 -
Lal16g1713 678 SUPERFAMILY Galactose-binding domain-like 481 674 IPR008979 -
Lal16g1713 678 Gene3D - 50 352 IPR014718 GO:0030246
Lal16g1713 678 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1713 Lal-Chr16 16101032 16108212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1713 48 676 Polysaccharide Lyase AT1G09890 55.222 0.0 723