Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1712 ATGAAGGAAATGGGTAATATAAAGAAAAGGGTTTTGATGTTATGTTTGTTTGGAATAACTATGCAACTTGTCTTCCATGGTGGCACTTCTCAAAATACACCATTGAGGAGATATTTGAGGGAAAACAATAGCAAGGAACCACCACTTCATAATTATGCAGTGAAGCTGAATAATGAAAGCAATCATAAGTTGGTGGTTGACAATGGCATAATTTCTGTTACATTGTCAAACCCTGAAGGCTACGTGATTGGAATATCATATAATGGAATTGATAATATACTTGAAGCTATAAATGAAGAACAAGATAGAGGGTATTTGGACGTTGTTTGGAATGAACTCGGAAAACCTAGTATCTTTCAGAGAATCCATGGGACAAAATTTTCAGTAATAACAATTGAGGAGAATCTGGTTGAGGTTTCATTTTTAAGAACATGGGAATCTTCCATGAATGGCACAAATGTCCCCATAAATATAGATACAAGATACATTTTTCGAGAAAATGATTCTGGATTTTATTCATATGCAATATTCGATCGTCCGAAAGGATTGCCAGCGGTGGAGGTTGATCAAATTAGAATTGTTTTCAAACTTCAGGAAAGCAGGTTCAACTACATGGCTATAGAAGATAACATGCAAAGAAGAATGCCAACAATGAGAGATAGAAAAAAAGGCCAAGACTTGGCATATCCTGAAGCAATTCTATTAACTAACCCTAGTGACCCACAATTTAGAGGAGAGGTTGATGATAAATATCAATACTCAATTGAGAACAAAGATAACAAATTACATGGATGGATTAGTGTTGATTCTGATTCACCAATGGGTTTTTGGATGATAACACCAAGTAATGAATTCAGAAATGGTGGACCCAACAAGCAAGACCTCACTTCTCATGTGGGTCCCATTACCCTAAGTATGTTTATGAGCACTCATTATGCTGGAAAGGAAATAACCATGTCATTTGAAGAAGGGGAAACCTATAAAAAGGTTTTTGGTCCTGTTTTTATTTATCTTAACTCAGCAACAACTAAAGATAATTCACTTTCCCTCTGGTCAGATGCTGAGGATCAGCTTTCCAAGGAAGTCAAAAGTTGGCCTTATGATTTTCCTAAATCACAAGATTTCGTTAAACCCAATGAAAGAGGAAAAGTATTGGGAAGATTACTAATCCAAGATAGGTATATCAATGGAGGTAGGTTTCAGTATGCTAATAATGCTTATGTTGGTCTTGCTTTGCCTGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGTTATCAATTTTGGACTAGAAGTGACTCAAAAGGATATTTCACAATAGAAAATATTGTACCTGGAGTTTATAATTTGTATGCATGGGTTCCTAGCTTCATTGGTGATTACAAATACAATACTTCAATCCTCGTGACACAAGGAGGAGTCATGAATTTGGATAAATTGGTTTATAGTCCTCCAAGAAATGGACCAACTCTTTGGGAAATTGGGATCCCAGATCGTTCAGCTGCTGAATTTTATGTGCCTGACCCCTATCCTACTCTTATGAATAAATTATACAATGATCAACCTAAAGAGAAGTTTAGACAATACGGGCTATGGGAGCGTTACGTTGATTTATATCCAAATGATGATTTAGTATACACAGTTGGTGTTAACAAGTTTAATAAGGATTGGTTTTTTGCTCATGTTACAAGAAACATAGGAAATAAAACATATGGACCCACTACATGGCAAATTATATTTGAACATGAACATGACATTTTTAGTGGAAACTACACACTACAATTGGCCTTGGCATCTGCTAAAGATGCTGAGCTACAAGTTAGGTTCAATGACCCTAGCATCAATCCACCACACTTTACAACAGGACAAATAGGTGGAGATAATTCCATTGCAAGGCATGGCATGCATGGATTATATTGGTTATTTAGTATTGATGTTCCAAGTGATCATTTTGTGAAAGGGAAGAACACTATTTATATGAGACAATCAAGAGCCATAAATCCCTTTCAAGGAGTTATGTATGATTATATACGTTTAGAAAGTCCTTGTACTTAA 2055 0.3596 MKEMGNIKKRVLMLCLFGITMQLVFHGGTSQNTPLRRYLRENNSKEPPLHNYAVKLNNESNHKLVVDNGIISVTLSNPEGYVIGISYNGIDNILEAINEEQDRGYLDVVWNELGKPSIFQRIHGTKFSVITIEENLVEVSFLRTWESSMNGTNVPINIDTRYIFRENDSGFYSYAIFDRPKGLPAVEVDQIRIVFKLQESRFNYMAIEDNMQRRMPTMRDRKKGQDLAYPEAILLTNPSDPQFRGEVDDKYQYSIENKDNKLHGWISVDSDSPMGFWMITPSNEFRNGGPNKQDLTSHVGPITLSMFMSTHYAGKEITMSFEEGETYKKVFGPVFIYLNSATTKDNSLSLWSDAEDQLSKEVKSWPYDFPKSQDFVKPNERGKVLGRLLIQDRYINGGRFQYANNAYVGLALPGDAGSWQRESKGYQFWTRSDSKGYFTIENIVPGVYNLYAWVPSFIGDYKYNTSILVTQGGVMNLDKLVYSPPRNGPTLWEIGIPDRSAAEFYVPDPYPTLMNKLYNDQPKEKFRQYGLWERYVDLYPNDDLVYTVGVNKFNKDWFFAHVTRNIGNKTYGPTTWQIIFEHEHDIFSGNYTLQLALASAKDAELQVRFNDPSINPPHFTTGQIGGDNSIARHGMHGLYWLFSIDVPSDHFVKGKNTIYMRQSRAINPFQGVMYDYIRLESPCT 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1712 684 Gene3D - 56 355 IPR014718 GO:0030246
Lal16g1712 684 Pfam Polysaccharide lyase family 4, domain III 490 679 IPR029411 -
Lal16g1712 684 Gene3D - 488 680 - -
Lal16g1712 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 683 - -
Lal16g1712 684 SUPERFAMILY Galactose mutarotase-like 59 346 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lal16g1712 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 683 - -
Lal16g1712 684 SUPERFAMILY Galactose-binding domain-like 487 680 IPR008979 -
Lal16g1712 684 Pfam Polysaccharide lyase family 4, domain II 404 474 IPR029413 -
Lal16g1712 684 Pfam Rhamnogalacturonate lyase family 53 247 IPR010325 -
Lal16g1712 684 CDD RGL4_C 492 680 - -
Lal16g1712 684 SUPERFAMILY Starch-binding domain-like 380 479 IPR013784 GO:0030246
Lal16g1712 684 CDD RGL4_N 59 347 - -
Lal16g1712 684 CDD RGL4_M 380 480 IPR029413 -
Lal16g1712 684 Gene3D - 376 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1712 Lal-Chr16 16055567 16065473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1712 54 683 Polysaccharide Lyase AT1G09890 56.240 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1712 K18195 - gmx:100776664 1043.49