Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1685 ATGGAAGAGAGAACCCCTTTAACCTTAAACCTTCTGTTCTTTGAACAGAAGAAAATCTTGTTTGGTGAGTTTGAATTTGACTCTGTGGATGATCATAACATTCAACTGAGTGATGAAACTGTTGAACTAATGGTTCAGAGGGAGGAAGAACATTTGCCTAGAGATGATTACCTCAAGAATCTTCGTAGTAGGGAATCCAACATGAGTATTGTTAGAAACCAAGCACTTGATTGGATTTTGAAGAGAGGCATAAATTGGTTTGCACAATTGTTAGCTACAGCTTGTTTACAAATTGCTGCTAAAATGGGAGAAACTAAAGTGCCACCATATGCACGTTTACAAGTTGGATCACCAAAGTTTATATTTGAAGCCCTAACCATTCAAAGAATGGAACTACTTGTATTGAGCACATTGGGATGGAAAATGCAAGCAATAACACCATTTTCTTTCATAGGCTATTTCATCAGTAAGATCACTTATGAGAAGCATCAAATGAAGTCATCTCTTTCAAAATCTGTGAAGCTCATGCTTAGTATAAGTATTGATTTCTTGGAATTTAGGGCTTCTGAAATTGCTGCTGCAGTGGCAATTTCTGTTACAAGGGAATTGGAAGCTAAAGAGATTCATAAGGCCTTATCTTCTTTGGCTATGGTAAAGAAGGATAGAATTTTGAAGTGTCTTGAACTAATGAGAGATATGTCCATGGTTAAAGTTTCTGGTAATTTGAGCAGTAACTTATCTCCAGCTGGAGTGTTGAATTGTGCATGCTCTAGCTTCAAAAGTGATGAATTAACAGTTCCTTCTGTGAGTTCAAATACTGAGAGGAAATCCAATAATGTACCTTCTGATGAGACTTACAAGTCATGA 867 0.3668 MEERTPLTLNLLFFEQKKILFGEFEFDSVDDHNIQLSDETVELMVQREEEHLPRDDYLKNLRSRESNMSIVRNQALDWILKRGINWFAQLLATACLQIAAKMGETKVPPYARLQVGSPKFIFEALTIQRMELLVLSTLGWKMQAITPFSFIGYFISKITYEKHQMKSSLSKSVKLMLSISIDFLEFRASEIAAAVAISVTRELEAKEIHKALSSLAMVKKDRILKCLELMRDMSMVKVSGNLSSNLSPAGVLNCACSSFKSDELTVPSVSSNTERKSNNVPSDETYKS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1685 288 SUPERFAMILY Cyclin-like 35 142 IPR036915 -
Lal16g1685 288 MobiDBLite consensus disorder prediction 267 288 - -
Lal16g1685 288 Pfam Cyclin, C-terminal domain 145 236 IPR004367 -
Lal16g1685 288 PANTHER CYCLIN D2.1 PROTEIN 83 276 - -
Lal16g1685 288 Gene3D - 87 143 - -
Lal16g1685 288 Gene3D - 144 228 - -
Lal16g1685 288 Pfam Cyclin, N-terminal domain 88 142 IPR006671 -
Lal16g1685 288 PANTHER CYCLINS 83 276 IPR039361 -
Lal16g1685 288 SMART Cyclin_C_2 145 268 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1685 Lal-Chr16 15823677 15827138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1685 38 270 Core Cell Cycle Gene Families AT2G22490 41.935 1.77e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1685 K18810 - gmx:100794010 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1597 15 17832566 17834735 Lal16g1685 16 15823677 15827138 LSH
Lal16g0506 16 3197452 3200039 Lal16g1685 16 15823677 15827138 PCT
Lal15g0450 15 3048413 3051020 Lal16g1685 16 15823677 15827138 PCT
Lal16g1685 16 15823677 15827138 Lal16g0506 16 3197452 3200039 PCT
Lal16g1685 16 15823677 15827138 Lal15g0450 15 3048413 3051020 PCT