Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1645 ATGATGATTCTAACTCGTTCTTCTGCTTCCTTTCTTCAAAACCCACAATTACGTTTCTTCAACCATTCTCTTCTCAATCCTACTTCACCTTCTTCTCTTTTCAAATCACTTTCCTTCTTTTCTCTCTCCATAACTCAAACCAGAACGAATTTTTCAACTACAACCAACAACGTTGTTCCAACATCCCAAGATTCAAATGGAAAAGACACTTTCTTTGCTGAAGAATCCGTTTTTTGGAACTCACTTGGTCTTTCTGATACTATTTCTCGTTCACTCTCTAACATTGGTCTCAATAGACCCTCACTCGTTCAGGCTTCCTCTGTACCATCTGTGCTGTCAGGGAAGGATGTGATAATTGCGGCCGAGACTGGCAGTGGTAAAACATACAGTTACCTAGTTCCTCTAATTGATAAACTAATTGGTACCAATGAAAATTCTCTACAAACCGAATCTGATCAAGTAGTGTCCTCGACCCGTAAAGTTCTACTCGTTCTTTGTCCAAATGTACAACTATGTGAGCAGGTAGTTAGGATGGCTAGCAGTCTCTGTGGTGACAATGGTGAACCGATTGTTAGAGTGGCAGCCATTTGTGGCAGACAGGGATGGCCACACCGTGAACCTGATATCATTGTCACGACACCTGCTGCTCTTCTAAATTATGTTGACACTGATAGAGACCGTCGCTTGGAATTTATGCGTGGTGTTAAATATGTGGTTTTTGATGAAGCTGATATGCTTCTCTGTGGAAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTCCGCTTTGATGAGAAACTCGTATCTCAAGCAAAAGAATCTGCAGCGGAGTTACCAATGGAACTAGAATCTTCCTTGTCATCCAATGATGCTTTGGAAGTTGAAGAGGAACTTGAAAATGAAGCCATCTCAGAAGAGGACGATGATGATGTAAATGAGGAAATTCCTGATATTAATAATGAAGTTGAATCTGTTAAACGAAGAGACTGGAGGAGAGTGAGGAGAACTTATGAGCGTAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCAGTGAATGGAAAGAAAACAGCTGGAGGAATATTGAAACATTTGTTTCCCGATGCTAAGTGGGTTAGTGGAAACTACCTTCATTGTCACAGTCCAAGATTGGTGCAAAGATGGATTGAAGTTACAGTTGATACACAGGTGGATGAACTTATAAGGGCCGTGAAGTGGGGTTTCAGAGCTGAAGATTTGGATTCTGCTGGTGGCATTCACAGAACAATGGTGTTTGCCAATACTGTTGAGGCTGTTGAAGCTGTGGCGAAGCTATTGCACCACTCTGGGATTGAATGTTTACGTTATCATAAGGGTTGCACATTGGAGGAGCGAGCACAGACCTTAGTTGAATTCCACGAAAAAGGTGGTGTTCTTGTGTGTACTGATGCAGCTGCTCGTGGTGTTGATATTCCAAATGTCTTGCATGTTGTTCAGGCAGATTTTGCTACTTGTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAATTTGGAGTTGTTACTAGCATGTACACTGAATCCAACCGGGATCTTGTAGATGCAGTTCGCCGTGCTGGGAAACTTGGTCAACCCGTGGAAACTGCATTTAGCCGGAAAAGAGGCTTCCGTAACAAGCTAAAAAAGAGAGCTGCTGCAAACAAGGTCAGAGATTCAGAAACTATTGAAGAGTGTTCTAGCATGAGAGTATGA 1746 0.4221 MMILTRSSASFLQNPQLRFFNHSLLNPTSPSSLFKSLSFFSLSITQTRTNFSTTTNNVVPTSQDSNGKDTFFAEESVFWNSLGLSDTISRSLSNIGLNRPSLVQASSVPSVLSGKDVIIAAETGSGKTYSYLVPLIDKLIGTNENSLQTESDQVVSSTRKVLLVLCPNVQLCEQVVRMASSLCGDNGEPIVRVAAICGRQGWPHREPDIIVTTPAALLNYVDTDRDRRLEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLVSQAKESAAELPMELESSLSSNDALEVEEELENEAISEEDDDDVNEEIPDINNEVESVKRRDWRRVRRTYERSKQYIFVAATLPVNGKKTAGGILKHLFPDAKWVSGNYLHCHSPRLVQRWIEVTVDTQVDELIRAVKWGFRAEDLDSAGGIHRTMVFANTVEAVEAVAKLLHHSGIECLRYHKGCTLEERAQTLVEFHEKGGVLVCTDAAARGVDIPNVLHVVQADFATCAVDFLHRVGRTARAGQFGVVTSMYTESNRDLVDAVRRAGKLGQPVETAFSRKRGFRNKLKKRAAANKVRDSETIEECSSMRV 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1645 581 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 77 105 IPR014014 GO:0003724
Lal16g1645 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 526 IPR027417 -
Lal16g1645 581 CDD SF2_C_DEAD 385 523 - -
Lal16g1645 581 Gene3D - 392 580 IPR027417 -
Lal16g1645 581 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 554 - -
Lal16g1645 581 Pfam Helicase conserved C-terminal domain 421 514 IPR001650 -
Lal16g1645 581 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 562 IPR001650 -
Lal16g1645 581 SMART helicmild6 434 514 IPR001650 -
Lal16g1645 581 SMART ultradead3 96 388 IPR014001 -
Lal16g1645 581 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 53 554 - -
Lal16g1645 581 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 108 369 IPR014001 -
Lal16g1645 581 CDD DEADc 88 265 - -
Lal16g1645 581 Gene3D - 44 367 IPR027417 -
Lal16g1645 581 Pfam DEAD/DEAH box helicase 103 268 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1645 Lal-Chr16 15033618 15039775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1645 328 535 Eukaryotic Initiation Factors Gene Family AT5G11200 25.523 4.63e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1645 - - gmx:100780518 811.216